View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9385_low_7 (Length: 269)
Name: NF9385_low_7
Description: NF9385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9385_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 54689194 - 54688952
Alignment:
| Q |
8 |
ttcgtgttcctccaacagagacatgcctaacaatactgcagttgttgctttggcatcacagcagtactacacatgtgcaaatggttatgtttacaattaa |
107 |
Q |
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| T |
54689194 |
ttcgtgttcctccaacagagacatgcctaacaatactgcagttgttgctttggcatcacagcagtactacacatgtgcaaatggttatgtttacgattaa |
54689095 |
T |
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| Q |
108 |
aaacacgttttcggtgaagcatctgtattgaaaatgttataatcatgcaaatgagacagattatgagttggggagattccttgggggagacaaggctcta |
207 |
Q |
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| T |
54689094 |
aaacacgttttcggtgaagcatctgtattgaaaatgttataatcatgcaaatgagacagattatgagttggggagattccttgggggagacaaggctcta |
54688995 |
T |
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| Q |
208 |
acatttatgtaattatgtctgaatccaaatctggattagttgg |
250 |
Q |
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| T |
54688994 |
acatttatgtaattatgtctgaatccaaatctggattagttgg |
54688952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 54701101 - 54700899
Alignment:
| Q |
50 |
tgttgctttggcatcacagcagt--actacacatgtgcaaatggttatgtttacaattaaaaacacgtttt-cggtgaagcatctgtattgaaaatgtta |
146 |
Q |
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| T |
54701101 |
tgttgctttagcatcacagcagagaactaaacatgtgcaaatggttatatttaagattaaaa-cacatttttcggtgaagcatttgcattgaaaatgtta |
54701003 |
T |
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| Q |
147 |
taatcatgcaaatgagacagattatgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattag |
246 |
Q |
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| T |
54701002 |
taatcatgcaaatgagacagagtatgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattag |
54700903 |
T |
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| Q |
247 |
ttgg |
250 |
Q |
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|||| |
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| T |
54700902 |
ttgg |
54700899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 54693633 - 54693554
Alignment:
| Q |
170 |
atgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattagttg |
249 |
Q |
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||||||||| ||| |||| || |||||||| |||||||||||||| |||||||||| | ||||||||| |||||||| |
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| T |
54693633 |
atgagttggagagtttccatgagggagacacttctctaacatttatgcaattatgtctaattccaaatcttaattagttg |
54693554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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