View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9386_low_13 (Length: 344)
Name: NF9386_low_13
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9386_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 29137426 - 29137763
Alignment:
| Q |
1 |
cgcaccaattttcctcgtggaccttcaacctcgatgagtttggcatggattttgatgcttactccgtcgggaatgtccattgtttcggaagagaggatgg |
100 |
Q |
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| T |
29137426 |
cgcaccaatttgcctcgtggaccttcaacctcgatgagtttggcatggattttgatgcttactccgtcgggaatgtccattgtttcggaagagaggatgg |
29137525 |
T |
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| Q |
101 |
ttttcatcttgctctctctcgccgccggcgggaatgcagaggtgaagctttctgcgtgggtgaatagggttttaggattaggggtttagaaaagaggggt |
200 |
Q |
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| T |
29137526 |
ttttcatcttgctctctctcgccgccggcgggaatgcagaggtgaagctttctgcgtgggtgaatagggttttaggattaggggtttagaaaagaggggt |
29137625 |
T |
|
| Q |
201 |
ttatatatgattgagagtgaaataattgttattgggtcactctaatcgg-----atcttagatatgttgtgtatgaaagaagtaggagattattgttcac |
295 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29137626 |
ttatatatgattgagagtgaaataattgttgttgggtcactctaatcgggtcttagcttagatatgttgtgtatgaaagaagtaggagattattgttcac |
29137725 |
T |
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| Q |
296 |
aaacccttgaaattatacacccctttttatgtgagtat |
333 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
29137726 |
aaacccttgaaattatacacccctttttctgtgagtat |
29137763 |
T |
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