View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9386_low_14 (Length: 288)
Name: NF9386_low_14
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9386_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 56231110 - 56231368
Alignment:
| Q |
19 |
ataatggcagcctttgatatggctattcatgatggagttgatgttctttccctttctcttggaggtgatgcttctgattactttgatgatggcctttcaa |
118 |
Q |
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| T |
56231110 |
ataatggcagcctttgatatggctattcatgatggagttgatgttctttccctttctcttggtggtgatgcttctgattactttgatgatggcctttcaa |
56231209 |
T |
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| Q |
119 |
tcgctgcatttcacgcagttaaggaaggcatcactgtgttgtgttcagctggaaattcaggaccaacacctggaactgtttcaaatgttgcaccttggat |
218 |
Q |
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| T |
56231210 |
tcgctgcatttcacgcagttaaggaaggcatcactgtgttgtgttcagctggaaattcaggaccaacacctggaactgtttcaaatgttgcaccttggat |
56231309 |
T |
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| Q |
219 |
attaactgttgctgcaagtaccatagatagagattttgatgctagtgttcaactccata |
277 |
Q |
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| T |
56231310 |
attaactgttgctgcaagtaccatagatagagattttgatgctagtgttcaactccata |
56231368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 39188839 - 39189094
Alignment:
| Q |
22 |
atggcagcctttgatatggctattcatgatggagttgatgttctttccctttctcttggaggtgatgcttctgattactttgatgatggcctttcaatcg |
121 |
Q |
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| T |
39188839 |
atggcagcctttgatatggctattcatgatggggttgatgttctttccatatctcttggaagtcctgctgttgattactttgatgatgctctttcaattg |
39188938 |
T |
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| Q |
122 |
ctgcatttcacgcagttaaggaaggcatcactgtgttgtgttcagctggaaattcaggaccaacacctggaactgtttcaaatgttgcaccttggatatt |
221 |
Q |
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| T |
39188939 |
ctgcatttcatgctgttaagaaaggcatcactgtgttgtgttcagctggaaattctggaccaacatttggaactgtttcaaatgttgcaccttggatatt |
39189038 |
T |
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| Q |
222 |
aactgttgctgcaagtaccatagatagagattttgatgctagtgttcaactccata |
277 |
Q |
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| T |
39189039 |
aactgttgctgcaagtaccttagatagagagtttgatactgttgttcaactccata |
39189094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 31050980 - 31050907
Alignment:
| Q |
178 |
ggaccaacacctggaactgtttcaaatgttgcaccttggatattaactgttgctgcaagtaccatagatagaga |
251 |
Q |
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| T |
31050980 |
ggaccaacccctggaagtgttactaatgttgctccttgggtgttcactgttgctgctagtacaattgatagaga |
31050907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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