View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9386_low_16 (Length: 245)

Name: NF9386_low_16
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9386_low_16
NF9386_low_16
[»] chr5 (11 HSPs)
chr5 (5-229)||(41286365-41286589)
chr5 (1-159)||(41316352-41316510)
chr5 (1-169)||(31188371-31188539)
chr5 (3-155)||(41328321-41328473)
chr5 (1-155)||(41332332-41332486)
chr5 (1-158)||(41310612-41310769)
chr5 (1-158)||(41324421-41324578)
chr5 (1-105)||(31225274-31225378)
chr5 (44-152)||(41337304-41337412)
chr5 (1-93)||(31178402-31178494)
chr5 (1-158)||(41366512-41366666)
[»] chr4 (1 HSPs)
chr4 (46-158)||(17249070-17249182)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 41286365 - 41286589
Alignment:
Q  5 agacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  41286365 agacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacaggaaagtgagcactca 41286464  T
Q  105 caacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattatgtttttgatcccct 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41286465 taacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattatgcttttgatcccct 41286564  T
Q  205 aaatatacatactattgattttagt 229  Q
    |||||||||||||||||||||||||    
T  41286565 aaatatacatactattgattttagt 41286589  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 41316352 - 41316510
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||    
T  41316352 tgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatca 41316451  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 159  Q
    |||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316452 ctcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31188539 - 31188371
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| ||    
T  31188539 tgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatca 31188440  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 169  Q
    ||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188439 ctcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  3 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 102  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  103 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 155  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 155  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41310612 - 41310769
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | ||    
T  41310612 tgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatca 41310711  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 158  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310712 ctcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41324421 - 41324578
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    |||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | ||    
T  41324421 tgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatca 41324520  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 158  Q
    |||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324521 ctcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31225274 - 31225378
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| ||||||    
T  31225274 tgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagca 31225373  T
Q  101 ctcac 105  Q
    |||||    
T  31225374 ctcac 31225378  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  44 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 143  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  144 caggttagt 152  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

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Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31178494 - 31178402
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 93  Q
    ||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178494 tgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41366512 - 41366666
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | || |   ||    
T  41366512 tgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaaat---ca 41366608  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 158  Q
    |||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366609 ctcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  46 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 145  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  146 ggttagtctacaa 158  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

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