View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9386_low_19 (Length: 240)
Name: NF9386_low_19
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9386_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1609951 - 1609729
Alignment:
| Q |
1 |
ttacgtattgtctgaaagttctgtctactaaccacaactatatgagaagaaaattacactaaattcagtatataatgtcccaccataactattgcaaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1609951 |
ttacgtattgtctgaaagttctgtctactaaccacaactatatgagaagaaaattacactaaattcaatatataatgtcccaccataactattgcaaaaa |
1609852 |
T |
|
| Q |
101 |
ctccataataaatattccaacataacacatacacattataaacaactaaagtacgcatcattcctactaaacacaacgtcctaagtcataaaatgctctc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1609851 |
ctccataacaaatattccaacataacacatacacattataaacaactaaagtacgcttcattcctactaaacacaacgtcctaagtcataaaatgctctc |
1609752 |
T |
|
| Q |
201 |
aatatctctctcaagaaaagcat |
223 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
1609751 |
aatatctctcgcaagaaaagcat |
1609729 |
T |
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