View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9386_low_3 (Length: 524)

Name: NF9386_low_3
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9386_low_3
NF9386_low_3
[»] chr7 (12 HSPs)
chr7 (220-524)||(22831877-22832182)
chr7 (12-224)||(22835144-22835356)
chr7 (354-461)||(22816243-22816350)
chr7 (12-226)||(22886610-22886824)
chr7 (358-452)||(22886423-22886524)
chr7 (354-460)||(22810585-22810690)
chr7 (406-461)||(22843080-22843135)
chr7 (370-450)||(22843134-22843214)
chr7 (404-461)||(22874013-22874070)
chr7 (481-524)||(22841502-22841545)
chr7 (481-524)||(22894811-22894854)
chr7 (478-524)||(22859215-22859261)
[»] chr1 (3 HSPs)
chr1 (67-199)||(35877111-35877242)
chr1 (482-524)||(21149819-21149861)
chr1 (162-231)||(897241-897310)
[»] chr5 (1 HSPs)
chr5 (68-305)||(4523922-4524154)
[»] chr4 (1 HSPs)
chr4 (159-240)||(52934488-52934570)
[»] scaffold0533 (1 HSPs)
scaffold0533 (135-225)||(3152-3242)
[»] chr8 (1 HSPs)
chr8 (257-299)||(42447348-42447390)
[»] chr3 (1 HSPs)
chr3 (67-117)||(29675556-29675606)
[»] chr2 (1 HSPs)
chr2 (72-117)||(35984842-35984887)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 220 - 524
Target Start/End: Complemental strand, 22832182 - 22831877
Alignment:
Q  220 atagtattaataggggtatattagaaagaagaagaaaaataacaaatgcatttagtaatttgtagtgagtcttatatttaaggacatacattttctctta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  22832182 atagtattaataggggtatattagaaagaagaagaaaaataacaaatgcatttagtaatttgtagtgagtcttgtatttaaggacatacattttctttta 22832083  T
Q  320 taaatcgtcttatatttagagatgaggtgactatgtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22832082 taaatcgtcttatatttagagatgaggtgactatgtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcat 22831983  T
Q  420 aatcaatagtaacttgtcaagtccacacattcaagtttgaaaaggnnnnnnnnnncac-tttaagaatttagacgacattgatgttttaatttcacacat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||| |||||||||||||||||||||||||||||||||||||||||    
T  22831982 aatcaatagtaacttgtcaagtccacacattcaagtttgaaaagaaaaaaaaaaacacttttaagaatttagacgacattgatgttttaatttcacacat 22831883  T
Q  519 tcaatt 524  Q
    ||||||    
T  22831882 tcaatt 22831877  T

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Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 22835356 - 22835144
Alignment:
Q  12 gaacctgtggctcgaaatttcgcctcgatttttgcaagaagnnnnnnntttccttcgtccttttttataagaacactttacaaaagtcacgtgtattaag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  22835356 gaacatgtggctcgaaatttcgcctcgatttttgcaagaagaaaaaaatttccttcatccttttttataagaacactttacaaaaatcacgtgtcttaag 22835257  T
Q  112 aaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaattaccctttgtatataagtacattcaatgttattttgcattttctatg 211  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22835256 aaaagtctttggagtaaaatttttatctgaaatgtatgtatctattgctatattaccctttgtatataagtacattcaatgttattttgcattttctatg 22835157  T
Q  212 ataaattgatagt 224  Q
    ||||||| |||||    
T  22835156 ataaatttatagt 22835144  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 354 - 461
Target Start/End: Complemental strand, 22816350 - 22816243
Alignment:
Q  354 gtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaa 453  Q
    ||||||||  || |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||   |||||| ||||||||||||    
T  22816350 gtcaaaacccacttatatctttttatccttccaccacgtattaattcatcattttatttgcagcataatcaatagtaataggtcaaggccacacattcaa 22816251  T
Q  454 gtttgaaa 461  Q
    || |||||    
T  22816250 gtgtgaaa 22816243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 22886824 - 22886610
Alignment:
Q  12 gaacctgtggctcgaaatttcgcctcgatttttgcaagaagnnnnnnntttccttcgtccttttttataagaacactttacaaaagtcacgtgtattaag 111  Q
    |||| |||||||||||||||| ||  |||||||||| ||||       || ||| | |||||||||| ||||||||||||||||| ||||| ||| |||     
T  22886824 gaacatgtggctcgaaatttcaccatgatttttgcatgaagaaaaattttccctccatccttttttagaagaacactttacaaaaatcacgggtactaaa 22886725  T
Q  112 aaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaattaccctttgtatataagtacattcaatgttattttgcattttctatg 211  Q
    |||||||||| ||||||    ||| |||||||||| |||  || || |||||||||||||| |||| |||| ||||||| |||| ||| ||| ||||  |    
T  22886724 aaaagtctttcgagtaataaatttgtctgaaatgtgtgttactatttctaaattaccctttttataaaagtgcattcaaagttaattttcatattcttag 22886625  T
Q  212 ataaattgatagtat 226  Q
    |||||||||||||||    
T  22886624 ataaattgatagtat 22886610  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 358 - 452
Target Start/End: Complemental strand, 22886524 - 22886423
Alignment:
Q  358 aaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatc-------aatagtaacttgtcaagtccacacatt 450  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||       |||||||||| ||||||||||||||||    
T  22886524 aaaccaacatatatctttttatctttccaccacatattcattcatcatttgatttgaagcataatcaataatcaatagtaactggtcaagtccacacatt 22886425  T
Q  451 ca 452  Q
    ||    
T  22886424 ca 22886423  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 22810690 - 22810585
Alignment:
Q  354 gtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaa 453  Q
    |||||||| |||||||||||||| ||||||| ||||| |||||||| ||||||| |||||||||| ||||||||||||||  | |||| |||| ||||||    
T  22810690 gtcaaaaccaacatatatctttt-atccttcaaccacgtattcattaatcattttatttgcagcaaaatcaatagtaactgctaaagtgcacatattcaa 22810592  T
Q  454 gtttgaa 460  Q
    || ||||    
T  22810591 gtgtgaa 22810585  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 22843135 - 22843080
Alignment:
Q  406 ttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaagtttgaaa 461  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  22843135 ttgatttgcagcataatcaatagtaactggtcaagtccacacattcaagtgtgaaa 22843080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 22843214 - 22843134
Alignment:
Q  370 atctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacatt 450  Q
    ||||||||||| |||||| || |||||||||||||||| |||||||||||||||||| |||||  | ||| ||||||||||    
T  22843214 atctttttatctttccacaacgtattcattcatcattttatttgcagcataatcaatggtaaccggccaattccacacatt 22843134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 461
Target Start/End: Complemental strand, 22874070 - 22874013
Alignment:
Q  404 atttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaagtttgaaa 461  Q
    |||| |||| |||||||||||||||||||  ||||||||||||||||||||| |||||    
T  22874070 attttatttacagcataatcaatagtaaccggtcaagtccacacattcaagtgtgaaa 22874013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 22841545 - 22841502
Alignment:
Q  481 aagaatttagacgacattgatgttttaatttcacacattcaatt 524  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  22841545 aagaaattagacgacattgatgttttaatttcacatattcaatt 22841502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 22894854 - 22894811
Alignment:
Q  481 aagaatttagacgacattgatgttttaatttcacacattcaatt 524  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  22894854 aagaaattagacgacattgatgttttaatttcacatattcaatt 22894811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 524
Target Start/End: Complemental strand, 22859261 - 22859215
Alignment:
Q  478 tttaagaatttagacgacattgatgttttaatttcacacattcaatt 524  Q
    |||||||| |||||| ||||| |||||||||||||||| ||||||||    
T  22859261 tttaagaaattagacaacattaatgttttaatttcacatattcaatt 22859215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 35877242 - 35877111
Alignment:
Q  67 cgtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaatta 166  Q
    ||||| |||||||||||||||||||||||| | ||  ||||||| ||||||   |||||| |    ||| ||| |||||| | || || || ||| ||||    
T  35877242 cgtccctttttataagaacactttacaaaaat-acaggtattaataaaagttgctggagtgataaatttgtctaaaatgtgtataactattactagatta 35877144  T
Q  167 ccctttgtatataagtacattcaatgttatttt 199  Q
    |||||||||||||| ||||||||||||||||||    
T  35877143 ccctttgtatataaatacattcaatgttatttt 35877111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 21149819 - 21149861
Alignment:
Q  482 agaatttagacgacattgatgttttaatttcacacattcaatt 524  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  21149819 agaaattagacgacattgatgttttaatttcacatattcaatt 21149861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 897241 - 897310
Alignment:
Q  162 aattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtattaata 231  Q
    |||||| ||||||| |||| |||||| ||||||| ||| ||| ||| | ||||||| |||||||||||||    
T  897241 aattactctttgtacataaatacatttaatgttacttttcatattccaagataaatagatagtattaata 897310  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 305
Target Start/End: Complemental strand, 4524154 - 4523922
Alignment:
Q  68 gtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaattac 167  Q
    |||| |||| ||||||||||| || ||||  |||| ||||||||||||||  |||||||||    ||| |||||||||| |||  || || ||||||||     
T  4524154 gtcccttttaataagaacactctaaaaaaaacacgggtattaagaaaagttgttggagtaataaatttgtctgaaatgtgtgtgactattactaaattat 4524055  T
Q  168 cctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtattaat-aggggtatattagaaagaagaagaaaaataacaaat 266  Q
    |||||||| |||| | |||||||| ||| ||  ||| ||| | ||||| | ||| |||||||| ||||||||| | |      ||| || | | | ||||    
T  4524054 cctttgtagataaatgcattcaatattacttatcatattccaagataattagatggtattaataaggggtataattg------gaaaaagagtgataaat 4523961  T
Q  267 gcatttagtaatttgtagtgagtcttatatttaaggaca 305  Q
    |||| ||||||||||||| |||||||||||||| |||||    
T  4523960 gcatctagtaatttgtagcgagtcttatatttagggaca 4523922  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 52934488 - 52934570
Alignment:
Q  159 ctaaattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtattaat-aggggtatat 240  Q
    |||||||| ||||||| ||||| |||||||||||||| ||| ||| ||| | ||| ||||||| |||||||| ||||||||||    
T  52934488 ctaaattatcctttgtttataaatacattcaatgttacttttcatattccaagatgaattgattgtattaataaggggtatat 52934570  T

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Target: scaffold0533 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 3152 - 3242
Alignment:
Q  135 tatctgaaatgtatgtatctgttgctaaattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagta 225  Q
    |||||||||||||||  |||||| |||||||| | ||||| ||||| || ||| ||||||||||| ||| ||  | |||||||| ||||||    
T  3152 tatctgaaatgtatgcgtctgttactaaattatcatttgtgtataaatatatttaatgttatttttcatatttcaagataaattaatagta 3242  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 42447390 - 42447348
Alignment:
Q  257 aataacaaatgcatttagtaatttgtagtgagtcttatattta 299  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  42447390 aataataaatgcatctagtaatttgtaatgagtcttatattta 42447348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 29675556 - 29675606
Alignment:
Q  67 cgtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagt 117  Q
    ||||| |||||||||||  ||||||||||| ||||| ||||||||||||||    
T  29675556 cgtccctttttataagattactttacaaaaatcacgagtattaagaaaagt 29675606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 35984842 - 35984887
Alignment:
Q  72 ttttttataagaacactttacaaaagtcacgtgtattaagaaaagt 117  Q
    |||||||| |||||||||||||||| ||||| ||||||||| ||||    
T  35984842 ttttttattagaacactttacaaaaatcacgggtattaagataagt 35984887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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