View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9386_low_6 (Length: 403)
Name: NF9386_low_6
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9386_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 35184076 - 35183702
Alignment:
| Q |
19 |
cttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
35184076 |
cttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgc |
35183977 |
T |
|
| Q |
119 |
tcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35183976 |
tcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttct |
35183877 |
T |
|
| Q |
219 |
cggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
35183876 |
cggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctgaatatcatacagaattgaaacaga |
35183777 |
T |
|
| Q |
319 |
ctgttttccctattttttatgatgttgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttg |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35183776 |
ctgttttccctattttttatgatgccgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttg |
35183702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 42 - 364
Target Start/End: Complemental strand, 35106104 - 35105782
Alignment:
| Q |
42 |
caaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattt |
141 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| | ||| | ||||| |||||||||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
35106104 |
caaagctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtattt |
35106005 |
T |
|
| Q |
142 |
tcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctc |
241 |
Q |
| |
|
| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35106004 |
ttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctc |
35105905 |
T |
|
| Q |
242 |
taaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctattttttatgat |
341 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||| | || | ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
35105904 |
tgaaagatatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgat |
35105805 |
T |
|
| Q |
342 |
gttgatccatctcatgtacgaaa |
364 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
35105804 |
gttgatccatctcatgttcgaaa |
35105782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 45 - 393
Target Start/End: Complemental strand, 35178052 - 35177704
Alignment:
| Q |
45 |
agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcg |
144 |
Q |
| |
|
||||||| ||| || ||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |
|
|
| T |
35178052 |
agctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttttg |
35177953 |
T |
|
| Q |
145 |
ctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaa |
244 |
Q |
| |
|
| ||||||||||| ||||| || || |||||||||| |||||||| |||||||| |||||||||| || ||| ||||| ||||| ||||||||||| | |
|
|
| T |
35177952 |
cgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcaga |
35177853 |
T |
|
| Q |
245 |
aaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctattttttatgatgtt |
344 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| ||||| ||||||| |||||||| || | || ||| |||||||||||| ||||||||||| | |
|
|
| T |
35177852 |
aagatatgctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgtagcaatttcttacaaactgttttccctgttttttatgatatc |
35177753 |
T |
|
| Q |
345 |
gatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttg |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
35177752 |
aatccatctcatgtacgaaaacagaacggtgtgtaccagaatgcctttg |
35177704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 46 - 393
Target Start/End: Complemental strand, 35169760 - 35169413
Alignment:
| Q |
46 |
gctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgc |
145 |
Q |
| |
|
|||||| ||| |||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
35169760 |
gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc |
35169661 |
T |
|
| Q |
146 |
tttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaa |
245 |
Q |
| |
|
||||||||||| ||||| || || |||||||||| | |||| |||||| || |||||||||| || ||| ||||||||||||||||||||||| || |
|
|
| T |
35169660 |
cttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaattacaaattcacggatttctattgttgtcttctcagaa |
35169561 |
T |
|
| Q |
246 |
aattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctattttttatgatgttg |
345 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| ||||| || |||| |||| | || || ||| ||| | ||||||||| ||||||||||| ||| |
|
|
| T |
35169560 |
agatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaaagatgtaacgatttgcaacgaatagttttccctgttttttatgatattg |
35169461 |
T |
|
| Q |
346 |
atccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttg |
393 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
35169460 |
atccatctcatgtacgaaaagagaatggtgtgtaccagaatgcctttg |
35169413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 60 - 387
Target Start/End: Complemental strand, 35055173 - 35054846
Alignment:
| Q |
60 |
gtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctttcaaggatgaca |
159 |
Q |
| |
|
||||| |||||||| | ||| ||||||| ||||| | |||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||| |
|
|
| T |
35055173 |
gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgaca |
35055074 |
T |
|
| Q |
160 |
aaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtc |
259 |
Q |
| |
|
|||| ||||| |||||||||| |||| ||||| |||||||||||||||| || ||| || |||| |||||||||||||||||||| ||||| || || |
|
|
| T |
35055073 |
aaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatc |
35054974 |
T |
|
| Q |
260 |
aacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgta |
359 |
Q |
| |
|
||| |||||||||||||||||||| | |||||||| ||| | | || ||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35054973 |
aacttggtgtttggaagagatggctgcaattgctgattgttgtgagtatttcaaacaaacagttttccctattttttatgatgttgatccatctgatgta |
35054874 |
T |
|
| Q |
360 |
cgaaaacagagcggggtgtaccagaatg |
387 |
Q |
| |
|
||||| ||||| ||||| || ||||||| |
|
|
| T |
35054873 |
cgaaagcagagtggggtatatcagaatg |
35054846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 358
Target Start/End: Original strand, 25484251 - 25484582
Alignment:
| Q |
27 |
gattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaa |
126 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| ||||||||| | ||| |||||||||| || | |||||||| ||||| || |||||||| | |
|
|
| T |
25484251 |
gattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctca |
25484350 |
T |
|
| Q |
127 |
caactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttc |
226 |
Q |
| |
|
| || ||||||||| | |||||||||||||| || | ||||||||| || |||| || ||||||||||||||||||||| || || ||||| |
|
|
| T |
25484351 |
atagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttc |
25484450 |
T |
|
| Q |
227 |
tattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttc |
326 |
Q |
| |
|
||| ||||| ||||| ||| ||||||| ||||||||||||||||| || ||||| ||||| |||| | ||| | |||||||| ||||||| |
|
|
| T |
25484451 |
tatcgttgttttctccaaagattatgcttcttcaacatggtgtttggatgaaatggctgctattagcgaatctagaataaatttgaaacaagttgttttc |
25484550 |
T |
|
| Q |
327 |
cctattttttatgatgttgatccatctcatgt |
358 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
25484551 |
cctgttttttatgatgttgatccatctcatgt |
25484582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 25636510 - 25636762
Alignment:
| Q |
45 |
agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcg |
144 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | ||| |||||||||||||||| |||||||| ||||| ||||||||||| || | || ||||||| |
|
|
| T |
25636510 |
agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga |
25636609 |
T |
|
| Q |
145 |
ctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaa |
244 |
Q |
| |
|
| ||||||||||||||| ||| | ||||| |||||| |||| | |||||| | || |||||| || ||| ||| ||||||| |||||||||| || |
|
|
| T |
25636610 |
ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaa |
25636709 |
T |
|
| Q |
245 |
aaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaat |
297 |
Q |
| |
|
| ||||||| ||||||||||||||||| || ||||| |||||| ||||| |
|
|
| T |
25636710 |
agattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat |
25636762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 367
Target Start/End: Complemental strand, 25436580 - 25436248
Alignment:
| Q |
35 |
tagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaag |
134 |
Q |
| |
|
||||||| ||| | ||| ||| |||||||| |||||||| | ||| |||| |||||||| |||||||||||||||| | |||||||| | || |
|
|
| T |
25436580 |
tagcatcgaaaaccataaatacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaa |
25436481 |
T |
|
| Q |
135 |
ggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttg |
234 |
Q |
| |
|
|||||||| | |||||||||||||| || ||||||||||| || |||| || ||||||||||||||||||| | | || ||| ||| ||| ||| |
|
|
| T |
25436480 |
ggtatttttaccttcaaggatgacaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgtatcattg |
25436381 |
T |
|
| Q |
235 |
tcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctatttt |
334 |
Q |
| |
|
| ||||| | | ||||||| ||||||||||||||||| || ||||| |||||| ||||| | | | |||||||||| ||| |||||| |||| |
|
|
| T |
25436380 |
ttttctcaagagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatctagaaaaaaattgaaacaagttgtattccctgtttt |
25436281 |
T |
|
| Q |
335 |
ttatgatgttgatccatctcatgtacgaaaaca |
367 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |
|
|
| T |
25436280 |
ttatgatgtcgatccatctcatgttcgaaaaca |
25436248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 297
Target Start/End: Original strand, 25442322 - 25442570
Alignment:
| Q |
49 |
atagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgcttt |
148 |
Q |
| |
|
||||||| |||||||| |||||||| | ||| ||||||||||||| | |||||||| ||||| || | |||||| || | || |||||||||| || |
|
|
| T |
25442322 |
atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt |
25442421 |
T |
|
| Q |
149 |
caaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaat |
248 |
Q |
| |
|
||||||||||||| ||| | ||||| |||||| |||| | |||||| | || |||||| || ||| ||| ||||||| |||||||||| ||| || |
|
|
| T |
25442422 |
caaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaagat |
25442521 |
T |
|
| Q |
249 |
tatgcggagtcaacatggtgtttggaagagatggccactattgctgaat |
297 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| |||||| ||||| |
|
|
| T |
25442522 |
tatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat |
25442570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 367
Target Start/End: Complemental strand, 25479049 - 25478730
Alignment:
| Q |
48 |
tatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctt |
147 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||| ||||||||| || || |||| ||| ||||| ||||||||||| || | || ||||||||| | | |
|
|
| T |
25479049 |
tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcacgt |
25478950 |
T |
|
| Q |
148 |
tcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaa |
247 |
Q |
| |
|
||| ||||||| | || || ||||| |||||| |||| | ||||||| ||| ||||||||| || || ||||||| ||||||||||| || | |
|
|
| T |
25478949 |
tcatggatgaccagcagctcgagaaaggggaatccatttcactccaacttcgacaggcaattcaacaatcgcgtctttctatagttgtcttctcagaaga |
25478850 |
T |
|
| Q |
248 |
ttatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctattttttatgatgttgat |
347 |
Q |
| |
|
|||||| | ||||| ||||||||||| || ||| | |||||| || || | || | || | ||||| | |||||| ||| |||| ||| |||| ||| |
|
|
| T |
25478849 |
ttatgctggctcaacttggtgtttggatgaaatgactgttattgccgactgccttacaaaactaaaacaaattgttttacctgttttctattatgtcgat |
25478750 |
T |
|
| Q |
348 |
ccatctcatgtacgaaaaca |
367 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
25478749 |
ccatctcatgtccgaaaaca |
25478730 |
T |
|
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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 500444 - 500356
Alignment:
| Q |
36 |
agcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatct |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
500444 |
agcatccaaagctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatct |
500356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 16466182 - 16466136
Alignment:
| Q |
232 |
ttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagag |
278 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
16466182 |
ttgttttctctaaaaactatgcggtgtcaaaatggtgtttggaagag |
16466136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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