View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9386_low_9 (Length: 368)

Name: NF9386_low_9
Description: NF9386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9386_low_9
NF9386_low_9
[»] chr3 (4 HSPs)
chr3 (18-350)||(11005935-11006267)
chr3 (18-350)||(11024510-11024842)
chr3 (18-350)||(11015498-11015830)
chr3 (18-215)||(47452021-47452218)
[»] chr4 (25 HSPs)
chr4 (159-308)||(48891317-48891469)
chr4 (151-288)||(37827029-37827172)
chr4 (249-304)||(7877727-7877782)
chr4 (244-307)||(48170587-48170650)
chr4 (248-295)||(48902929-48902976)
chr4 (244-307)||(50669048-50669111)
chr4 (251-304)||(7908325-7908378)
chr4 (78-138)||(45366409-45366469)
chr4 (248-291)||(48735423-48735466)
chr4 (249-291)||(7237764-7237806)
chr4 (249-291)||(7771396-7771438)
chr4 (249-291)||(7790081-7790123)
chr4 (48-138)||(45372260-45372350)
chr4 (248-305)||(48147744-48147801)
chr4 (239-308)||(48852654-48852723)
chr4 (78-207)||(48870366-48870495)
chr4 (78-207)||(48886052-48886181)
chr4 (19-207)||(48902703-48902891)
chr4 (244-304)||(50250809-50250869)
chr4 (244-283)||(7813470-7813509)
chr4 (244-283)||(7822959-7822998)
chr4 (241-288)||(48156465-48156512)
chr4 (79-206)||(48863054-48863181)
chr4 (244-291)||(49048614-49048661)
chr4 (248-308)||(49041188-49041248)
[»] chr6 (3 HSPs)
chr6 (159-291)||(21015711-21015849)
chr6 (244-291)||(21979679-21979726)
chr6 (26-86)||(21015554-21015614)
[»] chr7 (2 HSPs)
chr7 (244-306)||(48883794-48883856)
chr7 (19-86)||(30124190-30124257)
[»] chr8 (2 HSPs)
chr8 (244-291)||(12200300-12200347)
chr8 (244-291)||(12444728-12444775)
[»] chr5 (2 HSPs)
chr5 (248-306)||(29696203-29696261)
chr5 (162-207)||(42562453-42562498)
[»] chr1 (5 HSPs)
chr1 (248-307)||(24310168-24310227)
chr1 (248-291)||(24367144-24367187)
chr1 (248-307)||(24369477-24369536)
chr1 (248-297)||(24340405-24340454)
chr1 (248-297)||(24352770-24352819)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 11006267 - 11005935
Alignment:
Q  18 gatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11006267 gatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatacttcccgaatcttattctaatcttgaaattaa 11006168  T
Q  118 aagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctccttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11006167 aagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatccatccactggacgtctcagacaaataccttttcctccttcc 11006068  T
Q  218 aatttagatgcaaaatatgtatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtatag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11006067 aatttagatgcaaaatatgtatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtgtag 11005968  T
Q  318 acccaattgaagataatatttcatcacgtttga 350  Q
    |||||||||||||||||||||||||||||||||    
T  11005967 acccaattgaagataatatttcatcacgtttga 11005935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 11024842 - 11024510
Alignment:
Q  18 gatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  11024842 gatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaa 11024743  T
Q  118 aagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctccttcc 217  Q
    |||||| ||| |||||||||| |||||||||| |||||   |||| || |||||||||||||| ||  ||| || |||  ||||||| ||||||||||||    
T  11024742 aagttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaatccatcgaccagacatcacaagaaaataccatttcctccttcc 11024643  T
Q  218 aatttagatgcaaaatatgtatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtatag 317  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11024642 aatttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataagagtatag 11024543  T
Q  318 acccaattgaagataatatttcatcacgtttga 350  Q
    ||| ||||||||| ||||||||||||| |||||    
T  11024542 acctaattgaagaaaatatttcatcacatttga 11024510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 11015830 - 11015498
Alignment:
Q  18 gatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaa 117  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||    
T  11015830 gatccattgattttgaagcgtcgcttaacgatgattctgcttctacttcactgaaccttaattttatgcctccagaatcttattctagtcttgaaattaa 11015731  T
Q  118 aagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctccttcc 217  Q
    |||||||||| |||||||||| |||||||||| ||||| | |||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||    
T  11015730 aagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttttcctgcttcc 11015631  T
Q  218 aatttagatgcaaaatatgtatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtatag 317  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11015630 aatttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctataatacaagtatag 11015531  T
Q  318 acccaattgaagataatatttcatcacgtttga 350  Q
    ||||| | || ||||||||||| |||| |||||    
T  11015530 acccagtagacgataatatttcttcacatttga 11015498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 47452218 - 47452021
Alignment:
Q  18 gatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaa 117  Q
    |||| |||||||| ||||| || ||||| ||||||  |||||||||||||| |||| |||||||| |||||||| ||||| | | |||||||||||||||    
T  47452218 gatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaa 47452119  T
Q  118 aagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcctt 215  Q
    | |||||||| |||| |||||  |||| | || ||||| | |||||||| ||||||||||||||||||||  || ||||||||||||||| |||||||    
T  47452118 aggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctcctt 47452021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 308
Target Start/End: Original strand, 48891317 - 48891469
Alignment:
Q  159 acatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgtctatatgg 252  Q
    |||||||  ||||||||||||||||||||| || |||||||||||||||  |||||      || |  |||||||| || ||| |||||| |||||||||    
T  48891317 acatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattcgaggttagatgccaactatttatgttatctatatgg 48891416  T
Q  253 ttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 308  Q
    |||| |||||||    | |||||||||||| |||||||| ||||||||||||||||    
T  48891417 ttttaggtatgag---ttaagagatgattagttggtggtttcagtgtcctatgata 48891469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 37827172 - 37827029
Alignment:
Q  151 ttctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgt 244  Q
    ||||||| |||||||| ||||||||||||||||||||  || |||||||||||| ||  |||||      |||||||| || | | | ||| |  ||| |    
T  37827172 ttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtctccttttaactccaatttggaagaatattatttcggttct 37827073  T
Q  245 ctatatggttttgggtatgaccattcaagagatgattacttggt 288  Q
    |||||||||||||| |||||||| || |||||||||||||||||    
T  37827072 ctatatggttttggttatgaccagtctagagatgattacttggt 37827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 7877727 - 7877782
Alignment:
Q  249 atggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 304  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcctat 7877782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 48170650 - 48170587
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 307  Q
    ||||||||||||||||||||| || | ||||||||||||||| ||||| |||||||||| ||||    
T  48170650 tctatatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgat 48170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 48902929 - 48902976
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatca 295  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  48902929 tatggttttgggtatgaccactcaagagatgattacttgatggtatca 48902976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 50669048 - 50669111
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 307  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| || ||| |||||||||||    
T  50669048 tctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 50669111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 7908325 - 7908378
Alignment:
Q  251 ggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 304  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctat 7908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 45366469 - 45366409
Alignment:
Q  78 attttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 138  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||| |||||    
T  45366469 attttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttat 45366409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 48735466 - 48735423
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggt 48735423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 7237806 - 7237764
Alignment:
Q  249 atggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggt 7237764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 7771396 - 7771438
Alignment:
Q  249 atggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggt 7771438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 7790081 - 7790123
Alignment:
Q  249 atggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggt 7790123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 45372350 - 45372260
Alignment:
Q  48 atgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 138  Q
    |||||||||||||| ||||||| ||| ||| |||| ||  |||| ||||| ||| | |||||||||||||| |||||||| |||| |||||    
T  45372350 atgattctgcttctgcttcactaaaccttagttttgtggatccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttat 45372260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 48147801 - 48147744
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 305  Q
    |||||||||||||||||||| | || |||||||||||||||||| ||| | |||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttcattctcctatg 48147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 48852654 - 48852723
Alignment:
Q  239 tgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 308  Q
    |||| |||||||||||||||||||||||  ||||  |||||||||||||| || | | ||||||||||||    
T  48852654 tgttatctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgata 48852723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 48870366 - 48870495
Alignment:
Q  78 attttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatcc 177  Q
    ||||| ||||||| |||||||||| | || ||||||||||| |||||||| |||| |||||  | |||  || | ||  |  | ||||||||||||||||    
T  48870366 attttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatcc 48870465  T
Q  178 atccactggacgtctcaaacaaataccttt 207  Q
    |||||| |||  || |||||||||||||||    
T  48870466 atccaccggatttcacaaacaaataccttt 48870495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 48886052 - 48886181
Alignment:
Q  78 attttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatcc 177  Q
    ||||| ||||||| |||||||||| | || ||||||||||| |||||||| |||| |||||  | |||  || | ||  |  | ||||||||||||||||    
T  48886052 attttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatcc 48886151  T
Q  178 atccactggacgtctcaaacaaataccttt 207  Q
    |||||| |||  || |||||||||||||||    
T  48886152 atccaccggatttcacaaacaaataccttt 48886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 48902703 - 48902891
Alignment:
Q  19 atccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaa 118  Q
    ||||||||||||||||||||| || ||||||| |  ||||| | |||||| |||| |||| ||||||||||  | |||||||| | ||||  |||||| |    
T  48902703 atccatagattttgaagcatccctcaacgatggtcgtgcttatgcttcacagaaccttaaatttatgcttcgtggatcttattttgatctaaaaattata 48902802  T
Q  119 agttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttt 207  Q
     |||||||  |||| ||| |  |||||   | ||||||   ||||||  |||||||||| |||||||||  || ||||| |||||||||    
T  48902803 ggttcatgcagagggtttgtacttttgcactgttctttcaccatctatttatggaatccttccactggatttcacaaacgaataccttt 48902891  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 50250869 - 50250809
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 304  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  50250869 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 283
Target Start/End: Original strand, 7813470 - 7813509
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattac 283  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7813470 tctatatggttttggttatgaccagtcaagagatgattac 7813509  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 283
Target Start/End: Original strand, 7822959 - 7822998
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattac 283  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7822959 tctatatggttttggttatgaccagtcaagagatgattac 7822998  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 48156512 - 48156465
Alignment:
Q  241 ttgtctatatggttttgggtatgaccattcaagagatgattacttggt 288  Q
    |||||||||||| ||||||||||| || | ||||||||||||||||||    
T  48156512 ttgtctatatggatttgggtatgatcaattaagagatgattacttggt 48156465  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 48863054 - 48863181
Alignment:
Q  79 ttttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaatcca 178  Q
    |||||||||||| ||| ||||| |  ||||| | ||||||  ||||| | |||| ||||||||||| |  | | ||| | ||||||||||||||||||||    
T  48863054 ttttatgcttccagaaccttatacagatcttaatattaaagcttcatctagaggctttattgttttcaactgtgcttcaaacatctacctatggaatcca 48863153  T
Q  179 tccactggacgtctcaaacaaatacctt 206  Q
    ||||| |||  ||  |||||||||||||    
T  48863154 tccaccggagctcagaaacaaatacctt 48863181  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 49048661 - 49048614
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    |||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  49048661 tctatatggttttgggtatgacccatcaacagatgattatttggtggt 49048614  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 49041248 - 49041188
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 308  Q
    ||||||||||||||||| |  |||| ||||||||||||| |||| ||||| || |||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagtatcgtatgata 49041188  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 21015711 - 21015849
Alignment:
Q  159 acatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgtctatatgg 252  Q
    |||||||||||||||||||||||||| ||  || |||||||||||||||  |||||      ||  |||||| ||  || ||| |||||| |||||||||    
T  21015711 acatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattatatatgttatctatatgg 21015810  T
Q  253 ttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    ||||||||||||||  |||| ||||||||| ||||||||    
T  21015811 ttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 21979726 - 21979679
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  21979726 tctatatggttttggttatgaccagtcaagaaatgattacttggtggt 21979679  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 21015554 - 21015614
Alignment:
Q  26 gattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgc 86  Q
    ||||||||| |||| |||| |||| ||| | |||||||||| |||||| ||||||||||||    
T  21015554 gattttgaaacatcacttagcgattattatacttctacttcgctgaaccttaattttatgc 21015614  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 48883794 - 48883856
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatga 306  Q
    ||||||||||||||| |||||||  ||||||||||||||| ||||||| ||| ||||||||||    
T  48883794 tctatatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatga 48883856  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 30124257 - 30124190
Alignment:
Q  19 atccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgc 86  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||| | ||||||||| | || |||||||||    
T  30124257 atccatagattttgatgcatctcttaaggatcattctgcttatgcttcactgagccttgattttatgc 30124190  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 12200300 - 12200347
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  12200300 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 12200347  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 12444728 - 12444775
Alignment:
Q  244 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  12444728 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 12444775  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 29696203 - 29696261
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatga 306  Q
    |||||||||||||||||| | |||| |||||||||||||||| | ||| ||||||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 42562498 - 42562453
Alignment:
Q  162 tctacctatggaatccatccactggacgtctcaaacaaataccttt 207  Q
    |||||||||||||||||||||  |||| || |||||||||||||||    
T  42562498 tctacctatggaatccatccatcggacatcacaaacaaataccttt 42562453  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 24310168 - 24310227
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 307  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 24310227  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 24367144 - 24367187
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggt 291  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggt 24367187  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 24369477 - 24369536
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 307  Q
    ||||||||||| |||||| | |||| |||||||||| ||||||| ||||| |||||||||    
T  24369477 tatggttttggctatgacgagtcaacagatgattacctggtggtttcagtatcctatgat 24369536  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 24340405 - 24340454
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 297  Q
    |||||||||||||||||| | |||| | |||||||||||||||| |||||    
T  24340405 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagt 24340454  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 24352770 - 24352819
Alignment:
Q  248 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 297  Q
    |||||||||||||||||| | |||| | |||||||||||||||| |||||    
T  24352770 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagt 24352819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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