View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9387_high_13 (Length: 239)

Name: NF9387_high_13
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9387_high_13
NF9387_high_13
[»] chr1 (10 HSPs)
chr1 (1-158)||(49711002-49711159)
chr1 (4-158)||(49714645-49714799)
chr1 (1-158)||(49683392-49683549)
chr1 (7-148)||(49215663-49215804)
chr1 (1-157)||(49688291-49688447)
chr1 (11-150)||(49725428-49725567)
chr1 (183-221)||(17058768-17058806)
chr1 (183-221)||(36666544-36666582)
chr1 (13-45)||(49728880-49728912)
chr1 (173-221)||(50119036-50119084)
[»] chr2 (5 HSPs)
chr2 (165-221)||(14664048-14664103)
chr2 (179-221)||(3596314-3596356)
chr2 (183-221)||(32189970-32190008)
chr2 (179-211)||(19958170-19958202)
chr2 (179-219)||(22333841-22333881)
[»] chr5 (5 HSPs)
chr5 (179-218)||(7171795-7171834)
chr5 (171-222)||(28758373-28758424)
chr5 (175-220)||(20145524-20145569)
chr5 (179-220)||(24477890-24477931)
chr5 (181-221)||(4068046-4068086)
[»] scaffold0519 (1 HSPs)
scaffold0519 (183-221)||(2930-2968)
[»] scaffold0154 (1 HSPs)
scaffold0154 (179-221)||(28785-28827)
[»] chr8 (3 HSPs)
chr8 (183-221)||(11231484-11231522)
chr8 (183-221)||(22274579-22274617)
chr8 (183-220)||(3949049-3949086)
[»] chr7 (3 HSPs)
chr7 (183-221)||(36932037-36932075)
chr7 (181-222)||(40518855-40518896)
chr7 (184-224)||(41331048-41331088)
[»] chr6 (1 HSPs)
chr6 (179-221)||(29646512-29646554)
[»] chr4 (1 HSPs)
chr4 (161-211)||(8282416-8282466)
[»] chr3 (1 HSPs)
chr3 (177-221)||(19222548-19222592)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 49711002 - 49711159
Alignment:
Q  1 tctagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaattgatgaagaaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  49711002 tctagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagagtattaaaaatgaaaatgatgaagaaatgg 49711101  T
Q  101 tcagaaaaatgacaatggtgagtttatggtgcatacaaactgacccttcacatcgacc 158  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||||    
T  49711102 tcagaaaaatgtcagtggtgagtttatggtgcatacaaaccgacccttctcatcgacc 49711159  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 49714645 - 49714799
Alignment:
Q  4 agcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaattgatgaagaaatggtca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |    
T  49714645 agcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttgaactgaggtgtattaaaaatgaaattgatgaagaaatggtaa 49714744  T
Q  104 gaaaaatgacaatggtgagtttatggtgcatacaaactgacccttcacatcgacc 158  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  49714745 gaaaaatgacagtggtgagtttatggtgcatacgaactgacccttcgcatcgacc 49714799  T

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Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 49683392 - 49683549
Alignment:
Q  1 tctagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaattgatgaagaaatgg 100  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  49683392 tctagcgagttatattttccacattggatctacaagcgtcttgaattgaatcaagatcttggactcaagtgtattaaaaatgaaattgatgaagagatgg 49683491  T
Q  101 tcagaaaaatgacaatggtgagtttatggtgcatacaaactgacccttcacatcgacc 158  Q
    | ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  49683492 taagaaagatgacaatggtgagtttatggtgcataccaaccgacccttcacatcgacc 49683549  T

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Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 49215663 - 49215804
Alignment:
Q  7 gagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaattgatgaagaaatggtcagaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  49215663 gagtaatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaggtgtattaaaaatgaaattgatgaagaaatggtaagaa 49215762  T
Q  107 aaatgacaatggtgagtttatggtgcatacaaactgaccctt 148  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  49215763 aaatgacagtggtgagtttatggtgcatacaaacagaccctt 49215804  T

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Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 49688291 - 49688447
Alignment:
Q  1 tctagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaattgatgaagaaatgg 100  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  49688291 tctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatgg 49688390  T
Q  101 tcagaaaaatgacaatggtgagtttatggtgcatacaaactgacccttcacatcgac 157  Q
    | |||||||||||| ||||||||||||||||||||||||| || |||||||| ||||    
T  49688391 taagaaaaatgacagtggtgagtttatggtgcatacaaaccgatccttcacaccgac 49688447  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 49725428 - 49725567
Alignment:
Q  11 tatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaattgatgaagaaatggtcagaaaaat 110  Q
    |||||||||| || ||||||||||| |||||||| |  ||||||||||||||  |   |  | | | ||||||||||||||| |||| ||| ||||| ||    
T  49725428 tatattttcctcattggatttacaaccgtcttgattcaaatcaggatcttggtttacggaatgtaagaaatgaaattgatgacgaaaaggtgagaaagat 49725527  T
Q  111 gacaatggtgagtttatggtgcatacaaactgacccttca 150  Q
    |||||| |||  | ||||||||||||||||  ||||||||    
T  49725528 gacaatagtggctctatggtgcatacaaaccaacccttca 49725567  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 17058806 - 17058768
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  17058806 gagctcacacaattaattgtggagaagtggggtgtccgg 17058768  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 36666544 - 36666582
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  36666544 gagctcacacaattaattgtggagaagtggggtgtccgg 36666582  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 49728880 - 49728912
Alignment:
Q  13 tattttccacactggatttacaagcgtcttgaa 45  Q
    ||||||||||| |||||||||||||||||||||    
T  49728880 tattttccacaatggatttacaagcgtcttgaa 49728912  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 50119084 - 50119036
Alignment:
Q  173 ccagtagctggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    ||||| ||| |||||||||||||||| ||| |||||||| |||||||||    
T  50119084 ccagtggctagagctcacacaattaaatgtggagaagtggggtgtccgg 50119036  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 14664103 - 14664048
Alignment:
Q  165 tttttggtccagtagctggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||||| |||||||||    
T  14664103 ttttttgtctagtagctagagctcacacaattaattgtggagaagtg-ggtgtccgg 14664048  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 3596356 - 3596314
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| ||| |||||||| |||||||||    
T  3596356 gctggagctcacacaattaaatgtggagaagtggggtgtccgg 3596314  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 32189970 - 32190008
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  32189970 gagctcacacaattaattgtagaaaagtgaggtgtccgg 32190008  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 19958202 - 19958170
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtg 211  Q
    |||||||||||||||||||||||| ||||||||    
T  19958202 gctggagctcacacaattaattgtggagaagtg 19958170  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 22333881 - 22333841
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtgtggtgtcc 219  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  22333881 gctggagctcacacaattaaatgtggagaagtggggtgtcc 22333841  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 7171834 - 7171795
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtgtggtgtc 218  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  7171834 gctggagctcacacaattaattgtggagaagtggggtgtc 7171795  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 28758373 - 28758424
Alignment:
Q  171 gtccagtagctggagctcacacaattaattgtagagaagtgtggtgtccgga 222  Q
    ||||||| ||||||||||| |||||||| ||| |||||||| ||||||||||    
T  28758373 gtccagtggctggagctcatacaattaaatgtggagaagtgaggtgtccgga 28758424  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 20145524 - 20145569
Alignment:
Q  175 agtagctggagctcacacaattaattgtagagaagtgtggtgtccg 220  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||||||    
T  20145524 agtagctagagctcacacaattaaatgtggagaagtggggtgtccg 20145569  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 24477931 - 24477890
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtgtggtgtccg 220  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  24477931 gctggagctcacacaattaaatgtggagaagtggggtgtccg 24477890  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 4068086 - 4068046
Alignment:
Q  181 tggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||| ||| |||||||| |||||||||    
T  4068086 tggagctcacacaattaaatgtggagaagtggggtgtccgg 4068046  T

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Target: scaffold0519 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 2930 - 2968
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  2930 gagctcacacaattaattgtcgagaagtggggtgtccgg 2968  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 28785 - 28827
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| ||| |||||||| |||||||||    
T  28785 gctggagctcacacaattaaatgtggagaagtggggtgtccgg 28827  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 11231522 - 11231484
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  11231522 gagctcacacaattaattgtcgagaagtggggtgtccgg 11231484  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 22274579 - 22274617
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  22274579 gagctcacacaattaattgtggagaagtggggtgtccgg 22274617  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 3949049 - 3949086
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccg 220  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  3949049 gagctcacacaattaattgtggagaagtggggtgtccg 3949086  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 36932075 - 36932037
Alignment:
Q  183 gagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  36932075 gagctcacacaattaaatgtagagaagtggggtgtccgg 36932037  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 40518855 - 40518896
Alignment:
Q  181 tggagctcacacaattaattgtagagaagtgtggtgtccgga 222  Q
    |||||||||||||||||| ||| |||||||| ||||||||||    
T  40518855 tggagctcacacaattaaatgtggagaagtggggtgtccgga 40518896  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 41331048 - 41331088
Alignment:
Q  184 agctcacacaattaattgtagagaagtgtggtgtccggaat 224  Q
    ||||||||||||||| ||| |||||||| ||||||||||||    
T  41331048 agctcacacaattaaatgtggagaagtggggtgtccggaat 41331088  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 29646512 - 29646554
Alignment:
Q  179 gctggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||||||||||||||||||| ||| |||||||| |||||||||    
T  29646512 gctggagctcacacaattaaatgtggagaagtggggtgtccgg 29646554  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 8282466 - 8282416
Alignment:
Q  161 tttatttttggtccagtagctggagctcacacaattaattgtagagaagtg 211  Q
    ||||||||| ||| |||||||| | ||||||||||||||||||||| ||||    
T  8282466 tttattttttgtcaagtagctgaaactcacacaattaattgtagaggagtg 8282416  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 19222548 - 19222592
Alignment:
Q  177 tagctggagctcacacaattaattgtagagaagtgtggtgtccgg 221  Q
    |||| ||||||||||||||||| ||| |||||||| |||||||||    
T  19222548 tagccggagctcacacaattaaatgtggagaagtggggtgtccgg 19222592  T

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