View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9387_low_11 (Length: 287)
Name: NF9387_low_11
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9387_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 42285577 - 42285319
Alignment:
| Q |
18 |
actattgtacatgctgctattgcacaggctactgtgtccttcgtagatgatggtttggggccactgacccttgtagcccttacccctttctttatcactc |
117 |
Q |
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| T |
42285577 |
actattgtacatgctgctattgcacaggctactgtgtccttcgtagatgatggtttggggccactgacccttgtagcccttacccctttctttatcactc |
42285478 |
T |
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| Q |
118 |
cttctcttatttcctatcttattaccaatattcacacagttatttggtaattcttagccctcaccttgctttgtttttattaatacaacaattttattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285477 |
cttctcttatttcctatcttattaccaatattcacacagttatttggtaatttttagtcctcaccttgctttgtttttattaatacaacaattttattat |
42285378 |
T |
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| Q |
218 |
tacaaattgttgccaaattagttgatgaactggctaatagatctcaacaatgattctct |
276 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42285377 |
tacaaattgttgccaaattagctgatgaactggctaatagatctcaacaatgattctct |
42285319 |
T |
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