View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9387_low_16 (Length: 268)
Name: NF9387_low_16
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9387_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 52423181 - 52423385
Alignment:
| Q |
47 |
aatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgnnnnnnncctaaatc |
146 |
Q |
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| T |
52423181 |
aatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgaaaaaaacctaaatc |
52423280 |
T |
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| Q |
147 |
tccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaaggggattcgt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423281 |
tccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaaggggattcgt |
52423380 |
T |
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| Q |
247 |
ctctg |
251 |
Q |
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||||| |
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| T |
52423381 |
ctctg |
52423385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 42716085 - 42716166
Alignment:
| Q |
47 |
aatcattgatcagttaaattattataaaattgatagagattagcatctat-tccagttccttagattacaagtttccaagtc |
127 |
Q |
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||||||||||| ||| | |||||| ||||||| || ||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
42716085 |
aatcattgatctgttcatttattaaaaaattgctactgattagcatctatctccaattccttagattacaagtttccaagtc |
42716166 |
T |
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