View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9387_low_2 (Length: 505)
Name: NF9387_low_2
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9387_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 76 - 498
Target Start/End: Complemental strand, 31525556 - 31525134
Alignment:
| Q |
76 |
atttaccattcaagtgtttaaccacatctaacttctccaccacacatacggagtgatatatggacccataacatacatattacactcgttcttatatttg |
175 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
31525556 |
atttaacattcaagtgtttaaccacatctaacttctccaccacacatacggagtgatatatggacccataatatacttattacactcgttcttatatttg |
31525457 |
T |
|
| Q |
176 |
ttattttttcttattattagacctatgacatcactgattttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacaaacaaaatct |
275 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525456 |
ttattttttcttattattagacccatgacatcactgattttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacaaacaaaatct |
31525357 |
T |
|
| Q |
276 |
tgtttgtttattattttggccacatgagacaatgcattataagacgaaccaccctgtaacaaagctttctctgcactaaccctaacctctttcactcttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525356 |
tgtttgtttattattttggccacatgagacaatgcgttataagacgaaccaccctgtaacaaagctttctctgcactaaccctaacctctttcactcttt |
31525257 |
T |
|
| Q |
376 |
ccctcacgtggtttctcttcccattttggtccaccaaaattacttttctcaccaaacttgctatatcttccctatccaccacattcttccccggcgacac |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
31525256 |
ccctcacgtggtttctcttcccattttggtccaccaaaattacctttctcaccaaacttgctatctcttccctctccaccacattcttccccggcgacac |
31525157 |
T |
|
| Q |
476 |
cacagtcctcaccgcaacaccaa |
498 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31525156 |
cacagtcctcaccgcaacaccaa |
31525134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 31525657 - 31525593
Alignment:
| Q |
19 |
aaaaagaggccctaagccatatatattagctgtggcaaaattatgagagagactaccatttacca |
83 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525657 |
aaaaagaggcccttagccatatatattagctgtggcaaaattatgagagagactaccatttacca |
31525593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University