View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9387_low_20 (Length: 254)
Name: NF9387_low_20
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9387_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 4150037 - 4150268
Alignment:
| Q |
6 |
tttcgtggtagtggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgt |
105 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4150037 |
tttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttcaagaacaaaacctgt |
4150136 |
T |
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| Q |
106 |
tcatatcaagtgacacacttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatctactccaagtctccgtagctt |
205 |
Q |
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| T |
4150137 |
tcatatcaagtgacacacttgtttatttaag---aatcaatacatttgttactcaccaatgttggaaaatcgagttatctactccaagtctccgtagctt |
4150233 |
T |
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| Q |
206 |
tgattttcagggtaatcctgttcagaaactcagtg |
240 |
Q |
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| T |
4150234 |
tgattttaagggtaatcctattcagaaactcagtg |
4150268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 4165809 - 4166037
Alignment:
| Q |
6 |
tttcgtggtagtggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgt |
105 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4165809 |
tttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgt |
4165908 |
T |
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| Q |
106 |
tcatatcaagtgacacacttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatctactccaagtctccgtagctt |
205 |
Q |
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| T |
4165909 |
tcatatcaagtgacacacttgtttatttaag---aatcaatacatttgcta---ttcaacgttgcaaaatcgagttatctactccaagtctccgtagctt |
4166002 |
T |
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| Q |
206 |
tgattttcagggtaatcctgttcagaaactcagtg |
240 |
Q |
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| T |
4166003 |
tgattttaagggtaatcctattcagaaactcagtg |
4166037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 13485418 - 13485363
Alignment:
| Q |
181 |
tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactc |
236 |
Q |
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| T |
13485418 |
tatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactc |
13485363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 25597540 - 25597576
Alignment:
| Q |
170 |
caaaattgagttatctactccaagtctccgtagcttt |
206 |
Q |
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| T |
25597540 |
caaaattgagttatctactccaagtctacgtaacttt |
25597576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 32414267 - 32414316
Alignment:
| Q |
187 |
ctccaagtctccgtagctttgattttcagggtaatcctgttcagaaactc |
236 |
Q |
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| T |
32414267 |
ctccaagtctttgtagctttgattttaggggtattcctgttcagaaactc |
32414316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 7976438 - 7976378
Alignment:
| Q |
17 |
tggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcatt |
77 |
Q |
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| T |
7976438 |
tggtgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcatt |
7976378 |
T |
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