View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9387_low_22 (Length: 251)

Name: NF9387_low_22
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9387_low_22
NF9387_low_22
[»] chr1 (7 HSPs)
chr1 (1-242)||(49683100-49683341)
chr1 (15-242)||(49710709-49710937)
chr1 (1-238)||(49688010-49688245)
chr1 (21-242)||(49215372-49215593)
chr1 (21-242)||(49714351-49714571)
chr1 (21-242)||(49728548-49728769)
chr1 (1-242)||(49725126-49725367)
[»] chr6 (3 HSPs)
chr6 (120-223)||(31189573-31189676)
chr6 (126-227)||(31201386-31201487)
chr6 (141-222)||(31214205-31214286)
[»] chr7 (4 HSPs)
chr7 (87-181)||(31572844-31572938)
chr7 (99-175)||(33305159-33305235)
chr7 (87-181)||(31618400-31618494)
chr7 (102-163)||(31608405-31608466)
[»] scaffold0394 (1 HSPs)
scaffold0394 (105-181)||(2090-2166)
[»] chr4 (1 HSPs)
chr4 (105-181)||(15063368-15063444)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49683341 - 49683100
Alignment:
Q  1 ccatcatgctatagctgtagacatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgcc 100  Q
    ||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||    
T  49683341 ccatcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtctagagaacagctctggagcaatatatcctggtgtcccccttgcacc 49683242  T
Q  101 aaatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggt 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||    
T  49683241 aaatattgatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggt 49683142  T
Q  201 tttatgtcaaaatgtaagattctagtgttgcagcctctgtgc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49683141 tttatgtcaaaatgtaagattctagtgttgcagcctctgtgc 49683100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 49710937 - 49710709
Alignment:
Q  15 ctgtagacatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgccaaatatggatacaa 114  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  49710937 ctgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcaccaaatattgatacaa 49710838  T
Q  115 tactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaa-tcctcatcaagtaatatattatgaggttttatgtcaaaat 213  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||| || || ||| |  ||||| |||||||||||||||||||||||||||||||    
T  49710837 tgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatgtcaaaat 49710738  T
Q  214 gtaagattctagtgttgcagcctctgtgc 242  Q
    | |||||||||||||||||||||||||||    
T  49710737 gcaagattctagtgttgcagcctctgtgc 49710709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 49688245 - 49688010
Alignment:
Q  1 ccatcatgctatagctgtagacatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgcc 100  Q
    ||||||| | ||| |||||||||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||||  ||||| ||||||||||| ||    
T  49688245 ccatcattccataactgtagacatctgatttatgggacaccccaccaaaatttcgggagaacaactctggagcaatat--cctggcgttccccttgcacc 49688148  T
Q  101 aaatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggt 200  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||    
T  49688147 aaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgaggt 49688048  T
Q  201 tttatgtcaaaatgtaagattctagtgttgcagcctct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49688047 tttatgtcaaaatgtaagattctagtgttgcagcctct 49688010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 49215593 - 49215372
Alignment:
Q  21 acatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgccaaatatggatacaatacttt 120  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||||||||    
T  49215593 acatctgatttatgtgacaccccaccaaaatgtctggagaacaactctggagcaatatatcctggcgttcctcttgcgccaaatacggatgcaatacttt 49215494  T
Q  121 cttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagat 220  Q
    |||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||| | |||||||||||||||||| ||||||||||||| |||||    
T  49215493 cttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaatgcaagat 49215394  T
Q  221 tctagtgttgcagcctctgtgc 242  Q
    ||||||||| ||||||||||||    
T  49215393 tctagtgttacagcctctgtgc 49215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 49714571 - 49714351
Alignment:
Q  21 acatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgccaaatatggatacaatacttt 120  Q
    |||||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||| ||||    
T  49714571 acatctgatttatgtgacaccccgtcaaaatttctggagaacaactctggagcaatatatcctggtgttccccc-gcaacaaatatggatacaatgcttt 49714473  T
Q  121 cttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagat 220  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  49714472 cttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgaggtttaatgtcaaaatgtaagat 49714373  T
Q  221 tctagtgttgcagcctctgtgc 242  Q
    ||||||||| ||||||||||||    
T  49714372 tctagtgttacagcctctgtgc 49714351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 49728769 - 49728548
Alignment:
Q  21 acatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgccaaatatggatacaatacttt 120  Q
    ||||| ||||| || || || |||||||||| |||||||||||  ||||||||||| |||||||  || || || || || |||| |||||  |||||||    
T  49728769 acatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagcaatgtatcctgcagtacctctagcacctaataaggatatgatacttt 49728670  T
Q  121 cttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagat 220  Q
    ||||||||||||||| ||| |||||||||||||| ||||  ||||| || ||||| || || || |||||||||||||||||||| ||||||||||| ||    
T  49728669 cttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaat 49728570  T
Q  221 tctagtgttgcagcctctgtgc 242  Q
    | |||| ||||| ||| |||||    
T  49728569 tttagtattgcaacctttgtgc 49728548  T

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Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49725367 - 49725126
Alignment:
Q  1 ccatcatgctatagctgtagacatctgatttatgtgacaccccaccaaaatgtctagagaacaactctggagcaatatatcctggtgttccccttgcgcc 100  Q
    ||||||| | ||| ||||| |||||||| |||||||||||  |||||||||  ||||| || | ||| || |||||||| ||||  ||||| || || ||    
T  49725367 ccatcattccataactgtaaacatctgacttatgtgacactgcaccaaaattcctagaaaatacctcgggggcaatatagcctgccgttcctctcgcacc 49725268  T
Q  101 aaatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggt 200  Q
    |||||| ||||| ||||||||||||||||  || ||||| |||||||||||||| |||||| | |||  ||||| |||||| |  |  || |||||||||    
T  49725267 aaatattgataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggt 49725168  T
Q  201 tttatgtcaaaatgtaagattctagtgttgcagcctctgtgc 242  Q
    |||||||||||||| || |||||||| ||||||||| |||||    
T  49725167 tttatgtcaaaatgcaaaattctagtattgcagcctttgtgc 49725126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 31189573 - 31189676
Alignment:
Q  120 tcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaaga 219  Q
    |||||| ||||||| | ||| ||||||||||||||||||||||| || || |||| |||||| |  |  || ||||| ||||||||||| |||||||| |    
T  31189573 tctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaa 31189672  T
Q  220 ttct 223  Q
    ||||    
T  31189673 ttct 31189676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 31201386 - 31201487
Alignment:
Q  126 cttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagattctag 225  Q
    |||||||| | ||| |||||||||||||||||||| || || || |||| |||||| |  |  |||||||| ||||||||||| |||||||| |||| ||    
T  31201386 cttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgag 31201485  T
Q  226 tg 227  Q
    ||    
T  31201486 tg 31201487  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 31214286 - 31214205
Alignment:
Q  141 gcaagtccaaaatctgaaattttagggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagattc 222  Q
    ||||||||||||||||| || || || || ||||  ||||| | ||| |||||||| |||||||| ||||||||||| ||||    
T  31214286 gcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattc 31214205  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 31572938 - 31572844
Alignment:
Q  87 gttccccttgcgccaaatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatc 181  Q
    |||||||||| ||||| |||||| |||||||| || || ||| | ||||||| ||| ||||||||||| || ||||| ||||| ||||| |||||    
T  31572938 gttccccttgtgccaagtatggacacaatactatccttcctttggcatatttgagctagtccaaaatcagagatttttgggcaaaaatcttcatc 31572844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 33305235 - 33305159
Alignment:
Q  99 ccaaatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatc 175  Q
    |||| |||||||||||| || || || ||| ||||||||| ||| |||||||||||||| ||||| ||||| |||||    
T  33305235 ccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc 33305159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 31618400 - 31618494
Alignment:
Q  87 gttccccttgcgccaaatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatc 181  Q
    ||||| ||||| || ||||| || |||||||| || || ||| | ||||||||||| |||||||||||||| ||||| || || ||||| |||||    
T  31618400 gttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaatcttcatc 31618494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 31608405 - 31608466
Alignment:
Q  102 aatatggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaatttt 163  Q
    ||||| || |||||||| || || ||| ||||||||||||||||||||||||| || |||||    
T  31608405 aatattgacacaatactgtccttcctttgacatattttagcaagtccaaaatcagatatttt 31608466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 2090 - 2166
Alignment:
Q  105 atggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatc 181  Q
    ||||| |||| ||| |||||  || |||||||||||||||| |||||||| || ||||| ||||| ||||| |||||    
T  2090 atggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcatc 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 15063444 - 15063368
Alignment:
Q  105 atggatacaatactttcttttcttggacatattttagcaagtccaaaatctgaaattttagggcagaaatcctcatc 181  Q
    ||||| |||| ||| |||||  || |||||||||||||||| |||||||| || ||||| ||||| ||||| |||||    
T  15063444 atggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcatc 15063368  T

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