View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9387_low_3 (Length: 491)
Name: NF9387_low_3
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9387_low_3 |
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| [»] scaffold0260 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 212 - 451
Target Start/End: Original strand, 21695678 - 21695917
Alignment:
| Q |
212 |
cagaaacatcgaaaaaatagaacgaaagtctcaccacgaccgagcaagcttgtgttgtggtggatggagatggagacgatttggaacgcggtggttctgg |
311 |
Q |
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| T |
21695678 |
cagaaacatcgaaaaaatagagcgaaagtctcaccacgacggagcaagcttgtgttgtggtggatggagatggagacgatttggaacgcggtggttctgg |
21695777 |
T |
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| Q |
312 |
gtggttcaagtgatgcagcatgacttaagtcaaggaagttgtattccaacgtgacttaagccacacaagttatacaactgcgtgatttaactcatgcggg |
411 |
Q |
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| T |
21695778 |
gtggttcaagtgatgcagcgtgacttaagtcaaggaagttgtattccaacgtgacttaagtcacacatgttatacagctgcgtgagttaactcatgcggg |
21695877 |
T |
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| Q |
412 |
gtcttttcggaagtgcagtttggaacgaggaaaactcgat |
451 |
Q |
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| T |
21695878 |
gtctttttggaagtgcagttggaaacgaggaaaacgcgat |
21695917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 21695354 - 21695543
Alignment:
| Q |
19 |
aactcacgtggtgatatggtaactatgtttgtatttctgaagggattcctcaacatggtatggtagctatgttacgaattctgagatgagcaggttaagg |
118 |
Q |
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| T |
21695354 |
aactcacgtggtgatatggtagctatgtttgtattactgaagggattcctcaacatgatatggtagctatgttacgaattctgagatgaacaggttaagg |
21695453 |
T |
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| Q |
119 |
ttttggcatgtgaatgtgactgaattatgaacaaacatcagaggaaaaaacaacacaaaattgcaacacttgtgtcttgcgatttatagcact |
211 |
Q |
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| T |
21695454 |
ttttggcatgtgaatgtgagtgaattatgaacaaacatcagaggaaaaaacaacacaaaattgcaacac---tgtcttgcgatttatagcact |
21695543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 11663578 - 11663403
Alignment:
| Q |
19 |
aactcacgtggtgatatggtaactatgtttgtatttctgaagggattcctcaacatggtatggtagctatgttacgaattctgagatgagcaggttaagg |
118 |
Q |
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| T |
11663578 |
aactcacgcagtgatatggtatctatgtttgtattactgaagggattcctcaacatga------------gttacgaattctgagatgaacaggttaagg |
11663491 |
T |
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| Q |
119 |
ttttggcatgtgaatgtgactgaattatgaacaaacatcagaggaaaaaacaacacaaaattgcaacacttgtgtcttgcgatttatag |
207 |
Q |
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| T |
11663490 |
ttttggcatgtgaatgggagtgaattatgaacaaacatcagaggaaaaaacaacacaaaattgcagcac-tgtgtcttgcgatttatag |
11663403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 212 - 418
Target Start/End: Complemental strand, 11663264 - 11663064
Alignment:
| Q |
212 |
cagaaacatcgaaaaaatagaacgaaagtctcaccacgaccgagcaagcttgtgttgtggtggatggagatggagacgatttggaacgcggtggttctgg |
311 |
Q |
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| T |
11663264 |
cagaaacaacaaaaaaatagaacgaaaatctcaccatgacggagcaagcttgtgttgtgctggccggaaa------cgattcggaacacggtggttctag |
11663171 |
T |
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| Q |
312 |
gtggttcaagtgatgcagcatgacttaagtcaaggaagttgtattccaacgtgacttaagccacacaagttatacaactgcgtgatttaactcatgcggg |
411 |
Q |
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| T |
11663170 |
gtggttcaagtgatgcagcgtgacttaagtcacgcaggttgtactccaacatgccttaagtcacgcatgttatacagctgcatgagttaactcaggcggg |
11663071 |
T |
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| Q |
412 |
gtctttt |
418 |
Q |
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| T |
11663070 |
gtctttt |
11663064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 30943475 - 30943427
Alignment:
| Q |
332 |
tgacttaagtcaaggaagttgtattccaacgtgacttaagccacacaag |
380 |
Q |
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| T |
30943475 |
tgacttaaatcacgtaacttgtattccaacgtgacttaagtcacacaag |
30943427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 29220517 - 29220473
Alignment:
| Q |
44 |
tgtttgtatttctgaagggattcctcaacatggtatggtagctat |
88 |
Q |
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| T |
29220517 |
tgtttgtattactgaagggattcctcaacatgatatggtagctat |
29220473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0260 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0260
Description:
Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 20148 - 20107
Alignment:
| Q |
330 |
catgacttaagtcaaggaagttgtattccaacgtgacttaag |
371 |
Q |
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| T |
20148 |
catgacttaagtcacgtaggttgtattccaacgtgacttaag |
20107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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