View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9387_low_5 (Length: 400)
Name: NF9387_low_5
Description: NF9387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9387_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 10619827 - 10619456
Alignment:
| Q |
13 |
cagagaagaggtggtatgcgtaaccggagcaaacggattcatcggatcatggctagttcacaccctattatctaaacaaaacccacactacaaaatccac |
112 |
Q |
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| T |
10619827 |
cagagaagaggtggtatgcgtaaccggagcaaacggattcatcggatcatggctagttcacaccctattatctaaacaaaacccacactacaaaatccac |
10619728 |
T |
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| Q |
113 |
gctacaatcttccccaattccgacccatctcatcttttcacactccaccacgaagcccaatctcgcatcaccatcttccccgttaacatcctcgactcca |
212 |
Q |
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| T |
10619727 |
gctacaatcttccccaattccgatccatctcatcttttcacactccaccccgaagcccaatctcgcatcaccatcttccccgttaacatcctcgactcca |
10619628 |
T |
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| Q |
213 |
ccgccgtctcaaacgccatcaacggttgttccggtgtcttccatgtcgcttccccatgcactctcgaagacccaaccgatccacaaaaggaacttctgga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10619627 |
ccgccgtctcaaacgccatcaacggttgttccggtgtcttccatgtcgcttccccatgcactctcgaagacccaaccgatccacaaaaggaacttctgga |
10619528 |
T |
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| Q |
313 |
acccgctgtacaaggaacgcttaacgttctagaagcatcaaaacgcgcgggtgtgaagcgcgtggttcttac |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10619527 |
acccgctgtacaaggaacgcttaacgttctagaagcatcaaaacgcgcgggtgtgaagcgcgtggttcttac |
10619456 |
T |
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