View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_high_20 (Length: 321)
Name: NF9388A_high_20
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 28328221 - 28328522
Alignment:
| Q |
15 |
atgaccattcataattatttgactcctaaaccttctcgcttgtcattaatttgtgcatctgggtaaactttagaacattcaaatttttcatcnnnnnnnc |
114 |
Q |
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| T |
28328221 |
atgaccattcataattatttgactcctaaaccttctcgcttgtcattaatttgtgcatctgggtaaactttagaacattcaaatttttcatcaaaaaaac |
28328320 |
T |
|
| Q |
115 |
atgatatttatggtcaaatttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaaatggattttcaatcaatagagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28328321 |
atgatatttatggtcaaatttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaattggattttcaatcaatagagt |
28328420 |
T |
|
| Q |
215 |
agttggcgtattatacaaatttgcaaaataaatgttttatccattcaagttgccaagttagttttacacgttgttagcagtgacctcaattctccttttc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28328421 |
agttggcgtattatacaaatttgcaaaataaatgttttatccattcaagttgctaagttagttttacacgttcttagcagtgacctcaattctccttttc |
28328520 |
T |
|
| Q |
315 |
ct |
316 |
Q |
| |
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|| |
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| T |
28328521 |
ct |
28328522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 28332291 - 28332586
Alignment:
| Q |
18 |
accattcataattatttgactcctaaaccttctcgcttgtcattaatttgtgcatctgggtaaactttagaacattcaaatttttcatcnnnnnnncatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28332291 |
accattcataattatttgactcctaaaccttctcacttgtcattaatttgtgcatctgggtaaactttagaacattcaaatttttcatcaaaa---catg |
28332387 |
T |
|
| Q |
118 |
atatttatggtcaaatttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaaatggattttcaatcaatagagtagt |
217 |
Q |
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| T |
28332388 |
atatttatggtaaaatttgtatcatggcgtaatatgcggaaatttaagttatagtattttcctcagtaacttaaattggattttcaatcaatagagtagt |
28332487 |
T |
|
| Q |
218 |
tggcgtattatacaaatttgcaaaataaatgttttatccattcaagttgccaagttagttttacacgttgttagcagtgacctcaattctccttttcct |
316 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28332488 |
tggcgttttatacaaatttgcaaaatatatgttttatccattcaagttgctaagttagttttacacgttcctagcagtgacctcaattctccttttcct |
28332586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 21160189 - 21160110
Alignment:
| Q |
130 |
aaatttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaaatggattttcaatcaata |
210 |
Q |
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|||||||||||||| |||||||||| |||||||| | | || ||||||| ||||||||| ||| |||| |||||||||||| |
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| T |
21160189 |
aaatttgtatcataacgtattatgctgaaatttatggttta-tattttcctcagtaactcaaagtggactttcaatcaata |
21160110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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