View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_high_25 (Length: 275)

Name: NF9388A_high_25
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_high_25
NF9388A_high_25
[»] chr2 (17 HSPs)
chr2 (144-275)||(10355674-10355805)
chr2 (144-275)||(35734525-35734656)
chr2 (144-273)||(16254978-16255107)
chr2 (144-273)||(7759303-7759433)
chr2 (144-275)||(28808728-28808864)
chr2 (146-271)||(16256196-16256321)
chr2 (144-271)||(34210347-34210474)
chr2 (30-84)||(10355864-10355918)
chr2 (30-84)||(16255167-16255221)
chr2 (30-84)||(35734411-35734465)
chr2 (144-259)||(43589809-43589924)
chr2 (30-84)||(28808923-28808977)
chr2 (30-76)||(7759071-7759117)
chr2 (34-76)||(7759119-7759161)
chr2 (33-76)||(7759202-7759245)
chr2 (44-83)||(16256384-16256423)
chr2 (160-231)||(35851671-35851742)
[»] scaffold0470 (1 HSPs)
scaffold0470 (144-271)||(60-187)
[»] chr8 (11 HSPs)
chr8 (144-271)||(6610772-6610899)
chr8 (144-267)||(43633687-43633808)
chr8 (146-271)||(36557098-36557223)
chr8 (144-271)||(21595150-21595277)
chr8 (146-268)||(2955985-2956107)
chr8 (30-83)||(6610658-6610711)
chr8 (147-271)||(40977601-40977725)
chr8 (33-84)||(43633868-43633919)
chr8 (144-231)||(43047996-43048083)
chr8 (144-230)||(22976474-22976560)
chr8 (43-75)||(27424325-27424357)
[»] chr1 (23 HSPs)
chr1 (144-275)||(49622841-49622971)
chr1 (144-273)||(11376681-11376810)
chr1 (144-268)||(29743475-29743599)
chr1 (144-275)||(15544484-15544615)
chr1 (144-271)||(261672-261798)
chr1 (144-271)||(42886737-42886864)
chr1 (144-271)||(44565069-44565196)
chr1 (146-275)||(46833221-46833352)
chr1 (144-275)||(51621791-51621922)
chr1 (144-259)||(2326768-2326883)
chr1 (30-84)||(49622727-49622781)
chr1 (30-84)||(261558-261612)
chr1 (30-84)||(2326655-2326709)
chr1 (30-84)||(15544675-15544729)
chr1 (30-84)||(44565256-44565310)
chr1 (30-84)||(51621678-51621732)
chr1 (30-84)||(11376870-11376924)
chr1 (30-83)||(29743658-29743711)
chr1 (30-84)||(46833445-46833499)
chr1 (144-231)||(37661901-37661989)
chr1 (144-259)||(33505744-33505859)
chr1 (33-76)||(42886921-42886964)
chr1 (144-197)||(15429337-15429390)
[»] chr6 (7 HSPs)
chr6 (144-275)||(18227372-18227503)
chr6 (146-257)||(20219057-20219168)
chr6 (146-257)||(22113082-22113193)
chr6 (144-257)||(11455187-11455297)
chr6 (30-76)||(20219243-20219289)
chr6 (30-76)||(22113268-22113314)
chr6 (41-84)||(18227562-18227605)
[»] chr5 (9 HSPs)
chr5 (144-268)||(35384223-35384347)
chr5 (150-271)||(30411399-30411520)
chr5 (144-271)||(1751359-1751486)
chr5 (152-271)||(11726579-11726698)
chr5 (144-269)||(10329701-10329828)
chr5 (30-84)||(35384406-35384460)
chr5 (144-271)||(37276008-37276135)
chr5 (30-84)||(30411279-30411333)
chr5 (144-231)||(37275249-37275336)
[»] chr7 (9 HSPs)
chr7 (144-271)||(29008622-29008749)
chr7 (144-275)||(12313887-12314018)
chr7 (146-271)||(47645487-47645612)
chr7 (144-271)||(1827953-1828080)
chr7 (144-271)||(33118696-33118828)
chr7 (145-260)||(44119040-44119155)
chr7 (30-80)||(29008509-29008559)
chr7 (30-76)||(42027803-42027849)
chr7 (40-76)||(40040517-40040553)
[»] chr4 (21 HSPs)
chr4 (144-271)||(37563788-37563915)
chr4 (144-259)||(38024524-38024639)
chr4 (144-271)||(6885015-6885143)
chr4 (144-271)||(29191025-29191151)
chr4 (144-271)||(55873560-55873687)
chr4 (144-220)||(54975830-54975906)
chr4 (144-275)||(29118954-29119085)
chr4 (146-271)||(42739582-42739707)
chr4 (144-260)||(49284074-49284189)
chr4 (144-271)||(1921209-1921336)
chr4 (146-269)||(47497566-47497690)
chr4 (144-271)||(22443731-22443858)
chr4 (30-84)||(29191204-29191258)
chr4 (30-84)||(54975965-54976019)
chr4 (144-259)||(41279202-41279317)
chr4 (33-84)||(38024414-38024465)
chr4 (158-226)||(8067199-8067268)
chr4 (30-76)||(6884912-6884958)
chr4 (30-84)||(37563973-37564027)
chr4 (146-271)||(39593207-39593332)
chr4 (30-76)||(55873758-55873804)
[»] scaffold0155 (1 HSPs)
scaffold0155 (146-263)||(28057-28174)
[»] chr3 (2 HSPs)
chr3 (144-260)||(46485484-46485600)
chr3 (160-261)||(7311392-7311490)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 10355805 - 10355674
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  10355805 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 10355706  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| ||||||||||||||||||||||||    
T  10355705 catatttaattaaaatctcttccctcccatca 10355674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 35734525 - 35734656
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  35734525 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 35734624  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| ||||||||| ||||||||||||||    
T  35734625 catatttaattaaaatcccttccctcccatca 35734656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 16255107 - 16254978
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  16255107 tgaagtgaataatataaagatcttgatattgtttcaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 16255008  T
Q  244 catatttgattaaaatctcttccctcccat 273  Q
    ||||||| ||||||||| ||||||||||||    
T  16255007 catatttaattaaaatcccttccctcccat 16254978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 7759303 - 7759433
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaag-taatttggttttaaaatccctctccttcccttataaatcaaac 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| ||| ||| ||||||| || |||||    
T  7759303 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaaataatttggttttaaaatctctcccctccccttatgaaccaaac 7759402  T
Q  243 acatatttgattaaaatctcttccctcccat 273  Q
    |||||||| ||||||||||||||||||||||    
T  7759403 acatatttaattaaaatctcttccctcccat 7759433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 28808864 - 28808728
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||     ||| || |    
T  28808864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctcccctccccttatgaacc 28808765  T
Q  239 aaacacatatttgattaaaatctcttccctcccatca 275  Q
    |||||||||||| |||||||| |||||||||||||||    
T  28808764 aaacacatatttaattaaaatatcttccctcccatca 28808728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 16256321 - 16256196
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| |    
T  16256321 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaatcaaacata 16256222  T
Q  246 tatttgattaaaatctcttccctccc 271  Q
    ||||||||||||||| || |||||||    
T  16256221 tatttgattaaaatccctcccctccc 16256196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 34210347 - 34210474
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  34210347 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 34210446  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     |||||||||||||||| || |||||||    
T  34210447 tatatttgattaaaatccctcccctccc 34210474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 10355918 - 10355864
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10355918 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 10355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 16255221 - 16255167
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16255221 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 16255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 35734411 - 35734465
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35734411 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 35734465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 43589809 - 43589924
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||  ||||| ||||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || ||||||    
T  43589809 tgaagtgaataatttaaaaattgtgatactgttttaatattagagggataaaaaagtaatttagttttaaaatctctgccctccccttgtgaaccaaaca 43589908  T
Q  244 catatttgattaaaat 259  Q
      ||||||||||||||    
T  43589909 tgtatttgattaaaat 43589924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 28808977 - 28808923
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  28808977 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 28808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 7759071 - 7759117
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7759071 tagattattttagaagtgctctaatatttatgaatacctaatatttt 7759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 7759119 - 7759161
Alignment:
Q  34 ttattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  7759119 ttattttagaagtgctctaatatttatgaatacctaatatttt 7759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 7759202 - 7759245
Alignment:
Q  33 attattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  7759202 attattttagaagtgctctgatatttatgaatacctaatatttt 7759245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 16256423 - 16256384
Alignment:
Q  44 agtgctctaatatttatgaatacctaatattttgttagaa 83  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  16256423 agtgctctaatatttatgaatacccaatatcttgttagaa 16256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 35851742 - 35851671
Alignment:
Q  160 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 231  Q
    |||||||||| ||||||||||  |||||| || |||||||||||||||| || |||||| |  |||||||||    
T  35851742 aaaatcatgagattgttttaatattagagcgataaaaaagtaatttggtgttgaaatcctttcccttccctt 35851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 60 - 187
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  60 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 159  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| ||||||||| ||||||||||    
T  160 catatttaattaaaatcccttccctccc 187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 6610772 - 6610899
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  6610772 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 6610871  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| ||||||||| ||||||||||    
T  6610872 catatttaattaaaatcccttccctccc 6610899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 43633808 - 43633687
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  43633808 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 43633709  T
Q  244 catatttgattaaaatctcttccc 267  Q
    |  |||| ||||||||| ||||||    
T  43633708 c--atttaattaaaatcccttccc 43633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 36557223 - 36557098
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| |||| |||||| |    
T  36557223 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtaaaccaaacata 36557124  T
Q  246 tatttgattaaaatctcttccctccc 271  Q
    ||||||||||||||| || |||||||    
T  36557123 tatttgattaaaatccctcccctccc 36557098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 21595150 - 21595277
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||||  |||||| ||||| | || ||||||    
T  21595150 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctttctcctccccttctgaaccaaaca 21595249  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     |||||||||||||||| || |||||||    
T  21595250 tatatttgattaaaatccctcccctccc 21595277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 2956107 - 2955985
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || |||||| |    
T  2956107 aagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctaccctccccttgtgaaccaaacata 2956008  T
Q  246 tatttgattaaaatctcttccct 268  Q
    |||||||||||||||||| ||||    
T  2956007 tatttgattaaaatctctcccct 2955985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 6610658 - 6610711
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 83  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  6610658 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 6610711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 40977725 - 40977601
Alignment:
Q  147 agtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacat 246  Q
    |||||||||| |||||||  ||||| | ||||||  ||| ||||| |||| |||||||| ||||||||||||||| ||| ||||  | || |||||| ||    
T  40977725 agtgaataatttaaaaattgtgatactattttaatattatagggacaaaacagtaatttagttttaaaatccctcccctcccctcgtgaaccaaacatat 40977626  T
Q  247 atttgattaaaatctcttccctccc 271  Q
    |||||||||||||| || |||||||    
T  40977625 atttgattaaaatccctcccctccc 40977601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 43633919 - 43633868
Alignment:
Q  33 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43633919 attattttaaaagtgctctaatatttatgaatacctaatattttgttagaac 43633868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 43048083 - 43047996
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 231  Q
    ||||||||||||| |||||||| | ||  | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| |||||    
T  43048083 tgaagtgaataatttaaaaatcgttatgctattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctcccctt 43047996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 22976560 - 22976474
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct 230  Q
    ||||||||||||| | |||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  22976560 tgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaatatccctccccttccct 22976474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 27424325 - 27424357
Alignment:
Q  43 aagtgctctaatatttatgaatacctaatattt 75  Q
    |||||||||||||||||| ||||||||||||||    
T  27424325 aagtgctctaatatttataaatacctaatattt 27424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 49622841 - 49622971
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  49622841 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaataatttggttttaaaatccctct-cttcccttataaaccaaaca 49622939  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| |||||||| |||||||||||||||    
T  49622940 catatttaattaaaatttcttccctcccatca 49622971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 11376810 - 11376681
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  11376810 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 11376711  T
Q  244 catatttgattaaaatctcttccctcccat 273  Q
    ||||||| ||||||||||||||||||||||    
T  11376710 catatttaattaaaatctcttccctcccat 11376681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 29743599 - 29743475
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  29743599 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 29743500  T
Q  244 catatttgattaaaatctcttccct 268  Q
    ||||||| ||||||||| |||||||    
T  29743499 catatttaattaaaatcccttccct 29743475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 15544615 - 15544484
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  15544615 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctcccctccccttatgaaccaaaca 15544516  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| ||||||||| ||||||||||||||    
T  15544515 catatttaattaaaatcccttccctcccatca 15544484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 261672 - 261798
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  261672 tgaagtgaataatataaaaatcatgatattgttttaaggttagagg-ataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 261770  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| ||||||||||||||||||||    
T  261771 catatttaattaaaatctcttccctccc 261798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 42886864 - 42886737
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  42886864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 42886765  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| ||||||||| ||||| ||||    
T  42886764 catatttaattaaaatcccttccatccc 42886737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 44565196 - 44565069
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||| || ||||||    
T  44565196 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttgattttaaaatccctcccctccccttatgaaccaaaca 44565097  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| ||| ||||||||| ||||||    
T  44565096 catatttaattgaaatctctttcctccc 44565069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 46833352 - 46833221
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaa--gtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| || ||| ||||||| || ||||||    
T  46833352 aagtgaataatagaaaaatcatgatattgttttaaggttagagggataaaaaaaagtaatttggttttaaaatccttcccctccccttatgaaccaaaca 46833253  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| ||||||||| ||||||||||||||    
T  46833252 catatttaattaaaatcccttccctcccatca 46833221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 51621791 - 51621922
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||||| ||| |||  |||||| || ||||||    
T  51621791 tgaagtgaataatataaaaatcatgatattgttttaagattacagtgataaaaaagtaatttggttttaaaatctctcccctctccttatgaaccaaaca 51621890  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| |||||||||  || ||||||||||    
T  51621891 catatttaattaaaatccatttcctcccatca 51621922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 2326768 - 2326883
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||| ||| ||| || |||| |    
T  2326768 tgaagtgaataatataaaaatcataatattgttttaaggttagaggggtaaaaaggtaatttggttttaaaatccctcccctccccgtatgaaccaaata 2326867  T
Q  244 catatttgattaaaat 259  Q
    ||||||| ||||||||    
T  2326868 catatttaattaaaat 2326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 49622727 - 49622781
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622727 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 49622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 261558 - 261612
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  261558 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 2326655 - 2326709
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2326655 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 2326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 15544729 - 15544675
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15544729 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 44565310 - 44565256
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44565310 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 44565256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 51621678 - 51621732
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51621678 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 51621732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 11376924 - 11376870
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  11376924 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 11376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 29743711 - 29743658
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 83  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29743711 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 29743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 46833499 - 46833445
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  46833499 tagattattttagaattgttctaatatttatgaatacctaatattttgttagaac 46833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 37661901 - 37661989
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttccctt 231  Q
    ||||||||||||| |||||||| ||||| | ||||||  |||||||||  ||||||||||||| ||||||||||||||| ||| |||||    
T  37661901 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaagtaatttagttttaaaatccctcccctcccctt 37661989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 33505859 - 33505744
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  33505859 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 33505760  T
Q  244 catatttgattaaaat 259  Q
     |||||| ||| ||||    
T  33505759 tatatttaattgaaat 33505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 42886964 - 42886921
Alignment:
Q  33 attattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  42886964 attattttagaagtgctctaatatttatgaatacctaatatttt 42886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 15429390 - 15429337
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaa 197  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||| |||||    
T  15429390 tgaagtgaataattttaaaatcatgagattgttttaagattagagggataaaaa 15429337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 18227503 - 18227372
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  18227503 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 18227404  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| ||||||||| | ||||||||||||    
T  18227403 catatttaattaaaatcccgtccctcccatca 18227372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 20219168 - 20219057
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  20219168 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 20219069  T
Q  246 tatttgattaaa 257  Q
    ||||| ||||||    
T  20219068 tatttaattaaa 20219057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 22113193 - 22113082
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  22113193 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 22113094  T
Q  246 tatttgattaaa 257  Q
    ||||| ||||||    
T  22113093 tatttaattaaa 22113082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 11455297 - 11455187
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| ||||||||  |||| | ||||||  ||||||| | ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  11455297 tgaagtgaataatttaaaaatc--gatactattttaatattagagg-ataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 11455201  T
Q  244 catatttgattaaa 257  Q
     |||||||||||||    
T  11455200 tatatttgattaaa 11455187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 20219289 - 20219243
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  20219289 tagattattttagaagtgctctaatatttatgaatacctaatatttt 20219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 22113314 - 22113268
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22113314 tagattattttagaagtgctctaatatttatgaatacctaatatttt 22113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 18227605 - 18227562
Alignment:
Q  41 agaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  18227605 agaagtgctctaatatttatgaatacctaatattatgtgagaac 18227562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 35384347 - 35384223
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| || |||| || ||||||    
T  35384347 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctcccattatgaaccaaaca 35384248  T
Q  244 catatttgattaaaatctcttccct 268  Q
    ||||||| |||||||||||||||||    
T  35384247 catatttaattaaaatctcttccct 35384223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 30411399 - 30411520
Alignment:
Q  150 gaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatt 249  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |||||    
T  30411399 gaataatataaaaatcatgatattgttttaaggctagagggataaaaaagtaatttggttttaaaatccatcccattcccttatgaatcaaacatatatt 30411498  T
Q  250 tgattaaaatctcttccctccc 271  Q
    | ||||||||||||||| ||||    
T  30411499 taattaaaatctcttccttccc 30411520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 1751486 - 1751359
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1751486 tgaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1751387  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     ||||||||||||||||||| |||||||    
T  1751386 tatatttgattaaaatctctcccctccc 1751359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 11726579 - 11726698
Alignment:
Q  152 ataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttg 251  Q
    ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |||||||    
T  11726579 ataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacatatatttg 11726678  T
Q  252 attaaaatctcttccctccc 271  Q
    |||||||||||| |||||||    
T  11726679 attaaaatctctcccctccc 11726698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 269
Target Start/End: Original strand, 10329701 - 10329828
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaa--aagtaatttggttttaaaatccctctccttcccttataaatcaaa 241  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||  ||||||||| ||||||||||||||| | | ||||| | || ||||    
T  10329701 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaaagtaatttagttttaaaatccctcccatccccttgtgaaccaaa 10329800  T
Q  242 cacatatttgattaaaatctcttccctc 269  Q
    || ||||||||||||||||||| |||||    
T  10329801 catatatttgattaaaatctctcccctc 10329828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 35384460 - 35384406
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  35384460 tagattattttagaagtgctctaatatttatgaatacctaatattttgttcgaac 35384406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 37276135 - 37276008
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||| | ||||||||||| ||| ||| ||||| | || |||||     
T  37276135 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatgtagttttaaaatctctcccctccccttgtgaaccaaacc 37276036  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     |||||||||| ||||| || |||||||    
T  37276035 tatatttgattgaaatccctcccctccc 37276008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 30411279 - 30411333
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  30411279 tagattattttagaagtgctctaatatttatggatatctaatattttgttagaac 30411333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 37275249 - 37275336
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 231  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||||| ||||||||||| ||| ||| |||||    
T  37275249 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatttagttttaaaatctctcccctcccctt 37275336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 29008622 - 29008749
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||  || ||||||    
T  29008622 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccgtacgaaccaaaca 29008721  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| |||||||||||||| |||||    
T  29008722 catatttaattaaaatctcttcactccc 29008749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 12313887 - 12314018
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||  ||||||||||||||| ||| ||| | | || ||||||    
T  12313887 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaattcagttttaaaatccctcccctccccctgtgaaccaaaca 12313986  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
    ||||||| ||||||||||||||||||||||||    
T  12313987 catatttaattaaaatctcttccctcccatca 12314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 47645612 - 47645487
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  47645612 aagtgaataatttaaaaatcgtgatactattttaatattaaagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 47645513  T
Q  246 tatttgattaaaatctcttccctccc 271  Q
    |||||||||||||||||| |||||||    
T  47645512 tatttgattaaaatctctcccctccc 47645487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 1828080 - 1827953
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1828080 tgaagtggataatttaaaaatcgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1827981  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     ||||||||||||||||||| |||||||    
T  1827980 tatatttgattaaaatctctcccctccc 1827953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 33118828 - 33118696
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 238  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| || |||||||||| ||||||||||||||| ||| ||||     | | || |    
T  33118828 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataataaagtaatttagttttaaaatccctcccctcccctacccttgtgaacc 33118729  T
Q  239 aaacacatatttgattaaaatctcttccctccc 271  Q
    ||||| |||||||||||||||||||||||||||    
T  33118728 aaacatatatttgattaaaatctcttccctccc 33118696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 44119040 - 44119155
Alignment:
Q  145 gaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 244  Q
    |||||||||||| |||||||| ||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| | | ||||| | || ||||||     
T  44119040 gaagtgaataatttaaaaatcgtgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccatccccttctgaaccaaacat 44119139  T
Q  245 atatttgattaaaatc 260  Q
    ||||||||||||||||    
T  44119140 atatttgattaaaatc 44119155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 29008509 - 29008559
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgtta 80  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29008509 tagattattttagaagtgctctaatatttatgaatacctaatattttgtta 29008559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 42027803 - 42027849
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42027803 tagattattttagaagtgctctaatatttatgaatacctaatatttt 42027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 40040553 - 40040517
Alignment:
Q  40 tagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  40040553 tagaactgctttaatatttatgaatacctaatatttt 40040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 37563915 - 37563788
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||| || ||||||    
T  37563915 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctccccttatgaaccaaaca 37563816  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     |||||| ||||||||||||| ||||||    
T  37563815 tatatttaattaaaatctctttcctccc 37563788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 38024524 - 38024639
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| || |||| || ||||||    
T  38024524 tgaagtgaataatataaaaatcatgatattgttttaaggttagaaggataaaaaagtaatttggttttaaaatctctcccctccctttatgaaccaaaca 38024623  T
Q  244 catatttgattaaaat 259  Q
    ||||||| ||||||||    
T  38024624 catatttaattaaaat 38024639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 6885015 - 6885143
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttag-agggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||||||| |||| ||||||||||| || |||||    
T  6885015 tgaagtgaataatataaaaatcatgatattgttttaaggttagcacggataaaaaggtaatttgattttaaaattcctccccttcccttatgaaccaaac 6885114  T
Q  243 acatatttgattaaaatctcttccctccc 271  Q
    |||||||| ||||||||| |||| |||||    
T  6885115 acatatttaattaaaatcccttctctccc 6885143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 29191151 - 29191025
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || ||||||    
T  29191151 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctc-ccctcccgtatgaaccaaaca 29191053  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    |||| || ||||||||| |||| |||||    
T  29191052 catacttaattaaaatcccttcactccc 29191025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 55873687 - 55873560
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||  ||| ||||| | || ||||||    
T  55873687 tgaagtgaataatttaaaaatcatgatattattttaagattagagggataaaaaagtaatttggttttaaaatctcttccctccccttgtgaaccaaaca 55873588  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
    ||||||| |||||||||||  |||||||    
T  55873587 catatttaattaaaatctcccccctccc 55873560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 54975906 - 54975830
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccct 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54975906 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatccct 54975830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 29119085 - 29118954
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||| | ||| | ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||  | || | || ||||||    
T  29119085 tgaagtgaataatttaaaaatcgtaatactattttaagattagagggataaaaaagtaatttagttttaaaatccctcccctctctttgtgaaccaaaca 29118986  T
Q  244 catatttgattaaaatctcttccctcccatca 275  Q
     ||||||||||||||||||| |||||||||||    
T  29118985 tatatttgattaaaatctctcccctcccatca 29118954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 42739582 - 42739707
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || |||||| |    
T  42739582 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaacata 42739681  T
Q  246 tatttgattaaaatctcttccctccc 271  Q
    ||||||||||||||| || |||||||    
T  42739682 tatttgattaaaatccctcccctccc 42739707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 49284074 - 49284189
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||| |||| |||| | || ||||||    
T  49284074 tgaagtgaataatttaaaaatcatgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctcccctt-ccttgtgaaccaaaca 49284172  T
Q  244 catatttgattaaaatc 260  Q
     ||||||||||||||||    
T  49284173 tatatttgattaaaatc 49284189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 1921336 - 1921209
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  1921336 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaattttgttttaaaatccctcccctaccctcgtgaaccaaaca 1921237  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     |||||||||||||||| || |||||||    
T  1921236 tatatttgattaaaatccctcccctccc 1921209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 47497690 - 47497566
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 244  Q
    ||||||||||| | |||||||| | || ||||||||| ||||||||| |||||||||||||||| ||||||||| || ||| ||||| | || ||||||     
T  47497690 aagtgaataattttaaaatcataagatagttttaaggattagagggataaaaaagtaatttggtgttaaaatccttcacctccccttgtgaaccaaacat 47497591  T
Q  245 atatttgattaaaatctcttccctc 269  Q
    | |||| |||||||||||| |||||    
T  47497590 acatttaattaaaatctctcccctc 47497566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 22443731 - 22443858
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||  | ||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  22443731 tgaagtgaataatttaaaaattgtaatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 22443830  T
Q  244 catatttgattaaaatctcttccctccc 271  Q
     |||||||||||||||| || |||||||    
T  22443831 tatatttgattaaaatccctcccctccc 22443858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 29191258 - 29191204
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29191258 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 29191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 54976019 - 54975965
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  54976019 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 54975965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 41279317 - 41279202
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 242  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| ||||||| | ||||||| ||  ||| ||||| | || ||||     
T  41279317 tgaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaaagcaatttgg-tataaaatctcttccctccccttgtgaaccaaat 41279219  T
Q  243 acatatttgattaaaat 259  Q
    |||||||| ||||||||    
T  41279218 acatatttaattaaaat 41279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 38024414 - 38024465
Alignment:
Q  33 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  38024414 attattttagaagtgctctaatatttatgaatacctaatattttattagaac 38024465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 8067268 - 8067199
Alignment:
Q  158 taaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctcctt 226  Q
    |||||||||||||||||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||||    
T  8067268 taaaaatcatgatattgttttaagattaaagggataaaaaaagtaacttggatttaaaatccctctcctt 8067199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 6884912 - 6884958
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884912 tagattattttagaagtgctctaatatttatgaatacttaatatttt 6884958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 37564027 - 37563973
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 84  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||| |||||||    
T  37564027 tagattattttagaaacgctctaatatttatgaatacctaatattttattagaac 37563973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 39593207 - 39593332
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 244  Q
    ||||| ||||| | |||||||||| || ||||||||| ||||| ||| ||||| |||||||||| |||||| ||||| ||| ||||| | || ||||||     
T  39593207 aagtggataattttaaaatcatgagatagttttaaggattagaaggataaaaaggtaatttggtgttaaaa-ccctcacctccccttctgaaccaaacat 39593305  T
Q  245 atatttgattaaaatctcttccctccc 271  Q
    | |||| |||||||||||| |||||||    
T  39593306 acatttaattaaaatctctcccctccc 39593332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 55873804 - 55873758
Alignment:
Q  30 tagattattctagaagtgctctaatatttatgaatacctaatatttt 76  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||    
T  55873804 tagattatcttagaagtgctataatatttatgaatacctaatatttt 55873758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 28174 - 28057
Alignment:
Q  146 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 245  Q
    ||||||||||  |||||||||||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  28174 aagtgaataagttaaaaatcatgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 28075  T
Q  246 tatttgattaaaatctct 263  Q
    ||||||||||||||||||    
T  28074 tatttgattaaaatctct 28057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 46485484 - 46485600
Alignment:
Q  144 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 243  Q
    ||||||||||||| |||||||  || || ||||||||  ||||||||| ||||||||||||| ||||||||||||||  ||| ||||| | || ||||||    
T  46485484 tgaagtgaataatttaaaaattgtgttactgttttaatattagagggataaaaaagtaatttagttttaaaatccctgccctccccttgtgaaccaaaca 46485583  T
Q  244 catatttgattaaaatc 260  Q
      |||||||||||||||    
T  46485584 tgtatttgattaaaatc 46485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 7311490 - 7311392
Alignment:
Q  160 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaat 259  Q
    |||||||||| ||||||||||| ||||||||| ||||   ||||||| |||||||||| |||  || ||||| || | |||||| |||||| ||||||||    
T  7311490 aaaatcatgagattgttttaagattagagggataaaa---taatttgattttaaaatctctcgtctccccttctacaccaaacatatatttaattaaaat 7311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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