View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_high_27 (Length: 270)
Name: NF9388A_high_27
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_high_27 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 2003612 - 2003883
Alignment:
| Q |
1 |
agcagttgatactgtacaaagagagagaaaaaa--ggatatattaatttgatattnnnnnnnntgttgcaagttgaagatcaaatttacaatggtggcac |
98 |
Q |
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| T |
2003612 |
agcatttgatacggtacaaagagagagaaaaaaaaggatatattaatttgatattaaaaaaaatgttgcaagttgaagatcaaatttacaatggtggcac |
2003711 |
T |
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| Q |
99 |
agtgggatattttacatgtgtttgagatgatataaaattacagcttaattaatcatgatacatgtactgaggaatctaagatcactgttgagtatccact |
198 |
Q |
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| T |
2003712 |
agtgggatattttatatgtgtttgagatgatataaaattacagcttaattaatcatgatacatgtactgaggaatctaagatcattgttaagtatccact |
2003811 |
T |
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| Q |
199 |
atgtaggggtcaacacataagatagcacatggatcttgaggatgtcctactagaatcacatataatttgtgg |
270 |
Q |
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| T |
2003812 |
atgtaggagtcaacacataagatagcacatggatcttggggatgtcctactcgaatcacatataatttgtgg |
2003883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 2009747 - 2009891
Alignment:
| Q |
127 |
gatataaaattacagcttaattaatcatgatacatgtactgaggaatctaagatcactgt---------tgagtatccactatgtaggggtcaacacata |
217 |
Q |
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| T |
2009747 |
gatataaaattacaccttaattaatcaagatacatgtactaaggaatctaagatcactgcactgttaagtaagtatccattatcc-ggggtcaacacata |
2009845 |
T |
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| Q |
218 |
agatagcacatggatcttgaggatgtcctactagaatcacatataa |
263 |
Q |
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| T |
2009846 |
agatagcacatggatctttgggatgtcctactcgaatcacatataa |
2009891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 2009672 - 2009751
Alignment:
| Q |
29 |
aaaaaggatatattaatttgatattnnnnnnnntgttgcaagttgaagatcaaatttacaatggtggcacagtgggatat |
108 |
Q |
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||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
2009672 |
aaaaaagatatattaatttgatattaaaacaaaggttacaagttgaagatcaaaattacaatggtggcacgatgggatat |
2009751 |
T |
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