View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_high_28 (Length: 258)

Name: NF9388A_high_28
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_high_28
NF9388A_high_28
[»] chr1 (15 HSPs)
chr1 (6-159)||(49623081-49623229)
chr1 (192-257)||(46833179-46833244)
chr1 (189-257)||(49622948-49623016)
chr1 (191-257)||(15544441-15544507)
chr1 (162-247)||(42886646-42886736)
chr1 (184-247)||(21374002-21374065)
chr1 (184-246)||(11376619-11376681)
chr1 (184-247)||(2326896-2326959)
chr1 (184-247)||(29743408-29743471)
chr1 (184-247)||(44565005-44565068)
chr1 (184-257)||(51621899-51621972)
chr1 (83-159)||(49602734-49602810)
chr1 (162-196)||(11376582-11376616)
chr1 (162-196)||(21374068-21374102)
chr1 (162-206)||(25700306-25700350)
[»] chr4 (14 HSPs)
chr4 (165-256)||(54975749-54975840)
chr4 (162-243)||(6885148-6885234)
chr4 (191-247)||(38024652-38024708)
chr4 (193-258)||(29118913-29118978)
chr4 (184-247)||(49284196-49284259)
chr4 (184-247)||(42739708-42739771)
chr4 (184-244)||(1921145-1921205)
chr4 (184-244)||(22443862-22443922)
chr4 (184-247)||(30548051-30548114)
chr4 (162-202)||(22443919-22443959)
chr4 (162-202)||(42739768-42739808)
chr4 (200-247)||(55873512-55873559)
chr4 (162-196)||(38024718-38024752)
chr4 (211-247)||(29190983-29191019)
[»] chr2 (9 HSPs)
chr2 (184-257)||(35734633-35734706)
chr2 (162-246)||(7759433-7759522)
chr2 (184-257)||(10355624-10355697)
chr2 (188-257)||(28808682-28808751)
chr2 (162-244)||(34210478-34210560)
chr2 (184-257)||(16254926-16254999)
chr2 (184-247)||(43589937-43590000)
chr2 (191-247)||(16256139-16256195)
chr2 (162-201)||(16256095-16256134)
[»] chr8 (8 HSPs)
chr8 (160-244)||(22976388-22976472)
chr8 (184-247)||(6610900-6610963)
chr8 (184-247)||(2955918-2955981)
chr8 (184-244)||(43047901-43047961)
chr8 (184-244)||(40977542-40977602)
chr8 (162-202)||(36557047-36557087)
chr8 (162-202)||(40977505-40977545)
chr8 (162-202)||(2955881-2955921)
[»] chr7 (7 HSPs)
chr7 (184-257)||(12313995-12314068)
chr7 (193-247)||(29008750-29008804)
chr7 (184-247)||(1827889-1827952)
chr7 (188-247)||(33118636-33118695)
chr7 (191-246)||(40461283-40461338)
chr7 (162-245)||(44119173-44119256)
chr7 (184-247)||(47645423-47645486)
[»] scaffold0470 (1 HSPs)
scaffold0470 (184-247)||(188-251)
[»] chr5 (9 HSPs)
chr5 (184-247)||(1751295-1751358)
chr5 (192-247)||(30411522-30411577)
chr5 (184-246)||(11726700-11726762)
chr5 (184-246)||(10329832-10329894)
chr5 (184-247)||(37275944-37276007)
chr5 (199-247)||(35384171-35384219)
chr5 (184-247)||(37275334-37275397)
chr5 (163-202)||(35384115-35384154)
chr5 (164-202)||(25595631-25595669)
[»] chr6 (2 HSPs)
chr6 (181-257)||(18227319-18227395)
chr6 (184-247)||(11455106-11455169)
[»] chr3 (2 HSPs)
chr3 (184-247)||(46485612-46485675)
chr3 (162-202)||(46485672-46485712)
[»] scaffold0155 (2 HSPs)
scaffold0155 (186-247)||(27987-28048)
scaffold0155 (162-202)||(27943-27983)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 49623229 - 49623081
Alignment:
Q  6 agttgggtagagtatatgtgatatttacgccgtgataggagaatgtttgaaacattatagatggtagtagtactgtagtatggcgggggtttaatatatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     |||||||||||||| || ||||||||    
T  49623229 agttgggtagagtatatgtgatatttacgccgtgataggagaatgcttgaaacattatagatggtagta-----gtagtatggcggggtttcaatatatt 49623135  T
Q  106 attgttttaagtttgaaaggggtggtcttgaaacaaatggactcatccaaccat 159  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  49623134 attgtttcaagtttgaaaggtgtgctcttgaaacaaatggactcatccaaccat 49623081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 46833179 - 46833244
Alignment:
Q  192 gggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  46833179 gggaaggggagatatatcaattaaatatatatttggttcaaatgatgggagggaagggattttaat 46833244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 49623016 - 49622948
Alignment:
Q  189 ggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  49623016 ggagggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagaaattttaat 49622948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 15544441 - 15544507
Alignment:
Q  191 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||||||||| |||||||||    
T  15544441 agggaaggggagatatatcaattaaatacatgtttggttcaaatgatgggagggaagggattttaat 15544507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 42886646 - 42886736
Alignment:
Q  162 aggggaggggagtggttttaatggaggggaggg-----aaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||||||||| ||||||||||||||| ||||     ||||||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  42886646 aggggaggggaggggttttaatggagggaagggaagggaaggggagatatatcaattaaatatatgtttggttcaaatgatggaagggaag 42886736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 21374065 - 21374002
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  21374065 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 21374002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 11376619 - 11376681
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa 246  Q
    |||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  11376619 ggaggggaggaaaagggagatatatcaattaaatatatgtttggttcaaatgatgggagggaa 11376681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 2326959 - 2326896
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| | |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  2326959 ggagggaatggaaggggagatatatcaattatatatatgtttggttcaaatgatgggagggaag 2326896  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 29743408 - 29743471
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  29743408 ggagggaatggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagagaag 29743471  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 44565005 - 44565068
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||||||||||||||| || |||| |||||||||||||| |||||    
T  44565005 ggagggaagggaaggggagatatatcaattaaatacatgtttggttcaaatgatgggaaggaag 44565068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 51621972 - 51621899
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||| |||||||| ||||||||||||||| |||||| |||| |||||||||||||||| ||  |||||||||    
T  51621972 ggagggaagggaaggagagatatatcaattagatatatgtttggttcaaatgatgggaggaaatggattttaat 51621899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 49602810 - 49602734
Alignment:
Q  83 gtatggcgggggtttaatatattattgttttaagtttgaaaggggtggtcttgaaacaaatggactcatccaaccat 159  Q
    |||||| ||||||| |||||| | | ||||  |||||||||| | || | |||||||||||||||||||||||||||    
T  49602810 gtatggtgggggttcaatatagtctagtttccagtttgaaagtgttgctattgaaacaaatggactcatccaaccat 49602734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 11376582 - 11376616
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaa 196  Q
    |||||||||||| ||||||||||||||||||||||    
T  11376582 aggggaggggaggggttttaatggaggggagggaa 11376616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 21374102 - 21374068
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaa 196  Q
    |||||||||||| ||||||||||||||||||||||    
T  21374102 aggggaggggaggggttttaatggaggggagggaa 21374068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 25700350 - 25700306
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggagatat 206  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||    
T  25700350 aggggaggggagggattttaacggaggggaggggaggggagatat 25700306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 54975749 - 54975840
Alignment:
Q  165 ggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaa 256  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  54975749 ggaggggaggggttttaatggagggaagggaaggggagatatatcaattaaatatatatttggttcaaatgatgggagggaagggattttaa 54975840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 6885234 - 6885148
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggg-----gagatatatcaattaaatatatatttgcttcaaatgatgggagg 243  Q
    |||||||| ||| ||||||||||||||||||||||| |     ||||||||||||||||||||||||||| ||||||||||||||||    
T  6885234 aggggaggagaggggttttaatggaggggagggaagagaaggagagatatatcaattaaatatatatttggttcaaatgatgggagg 6885148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 38024708 - 38024652
Alignment:
Q  191 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  38024708 agggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaag 38024652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 29118913 - 29118978
Alignment:
Q  193 ggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatc 258  Q
    |||||||||||||| ||||||||||||||  ||| ||||||||||||||||| |||||||||||||    
T  29118913 ggaaggggagatatttcaattaaatatatgattggttcaaatgatgggaggggagagattttaatc 29118978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 49284259 - 49284196
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  49284259 ggagggaagggaatgggagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 49284196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 42739771 - 42739708
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| ||||||||| |||||| |||||||||||||| |||| |||||||||||||| |||||    
T  42739771 ggagggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggacggaag 42739708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 1921145 - 1921205
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 244  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  1921145 ggagggaagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggg 1921205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 22443922 - 22443862
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 244  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  22443922 ggagggaagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggg 22443862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 30548051 - 30548114
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||||||||||||||| | |||||||||| | |||| |||||| || ||||||||||    
T  30548051 ggaggggagggaaggggagatattttaattaaatatgtgtttggttcaaaagaggggagggaag 30548114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 22443959 - 22443919
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  22443959 aggggaggggaggggttttaatggaggggagggaaagggag 22443919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 42739808 - 42739768
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  42739808 aggggaggggaggggttttaatggaggggagggaaagggag 42739768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 55873512 - 55873559
Alignment:
Q  200 gagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||||||||||||||||||| |||||| ||| | |||||||    
T  55873512 gagatatatcaattaaatatatatttggttcaaacgatagaagggaag 55873559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 38024752 - 38024718
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaa 196  Q
    |||||||||||| ||||||||||||||||||||||    
T  38024752 aggggaggggaggggttttaatggaggggagggaa 38024718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 29190983 - 29191019
Alignment:
Q  211 attaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  29190983 attaaatatatgtttggttcaaatgatgggagggaag 29191019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 35734706 - 35734633
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  35734706 ggaggggagggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagggattttaat 35734633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 7759522 - 7759433
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaa-----ggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa 246  Q
    |||||||||||| ||||||||||||||||||||||     ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  7759522 aggggaggggaggggttttaatggaggggagggaaaggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaa 7759433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 10355624 - 10355697
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10355624 ggagggaagggaaggggaaatatatcaattaaatatatgtttggttcaaatgatgggagggaagagattttaat 10355697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 28808682 - 28808751
Alignment:
Q  188 gggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  28808682 gggagggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagatattttaat 28808751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 34210560 - 34210478
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 244  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  34210560 aggggaggggaggagttttaatggaggggagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggg 34210478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 16254926 - 16254999
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||    
T  16254926 ggaggggagggaagggaagatatatcaattaaatatatgtttggttcaaataatgggagggaagggattttaat 16254999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 43590000 - 43589937
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||    
T  43590000 ggagggaagggaaggggagatattttaattaaatatatgtttggttcaaatgatgggagggaag 43589937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 16256139 - 16256195
Alignment:
Q  191 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||    
T  16256139 agggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 16256195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 16256095 - 16256134
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaagggga 201  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  16256095 aggggaggggaggggttttaatggaggggagggaaaggga 16256134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 22976388 - 22976472
Alignment:
Q  160 ctaggggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 244  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  22976388 ctaggggaggggaggggttttaatggaggggagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggg 22976472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 6610963 - 6610900
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6610963 ggagggaagggaaagggagatatatcaattaaatatatgtttggttcaaatgatgggagggaag 6610900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 2955918 - 2955981
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| ||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||    
T  2955918 ggagggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 2955981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 43047901 - 43047961
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 244  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||| ||||||    
T  43047901 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgataggaggg 43047961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 40977542 - 40977602
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 244  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  40977542 ggagggaagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggg 40977602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 36557047 - 36557087
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  36557047 aggggaggggaggggttttaatggaggggagggaaagggag 36557087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 40977505 - 40977545
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  40977505 aggggaggggaggggttttaatggaggggagggaaagggag 40977545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 2955881 - 2955921
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  2955881 aggggaggggaggggttttagtggaggggagggaaagggag 2955921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 12314068 - 12313995
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    |||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  12314068 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaagagattttaat 12313995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 29008804 - 29008750
Alignment:
Q  193 ggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  29008804 ggaaggggagatatatcaattaaatatatgtttgattcaaatgatgggagggaag 29008750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 1827889 - 1827952
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||    
T  1827889 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatggaagggaag 1827952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 33118636 - 33118695
Alignment:
Q  188 gggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  33118636 gggagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgagagggaag 33118695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 40461338 - 40461283
Alignment:
Q  191 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa 246  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  40461338 agggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaa 40461283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 44119256 - 44119173
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggga 245  Q
    ||||||||||||  | |||||||||||| ||||||||  | |||| |||||||||||||| |||| ||||||||||||| ||||    
T  44119256 aggggaggggaggaggtttaatggagggaagggaaggaaaaatatttcaattaaatatatgtttggttcaaatgatgggtggga 44119173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 47645423 - 47645486
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| ||||||||| |||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  47645423 ggagggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgagagggaag 47645486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 251 - 188
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  251 ggagggaagggaaagggagatatatcaattaaatatatgtttggttcaaatgatgggagggaag 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 1751295 - 1751358
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  1751295 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 1751358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 30411577 - 30411522
Alignment:
Q  192 gggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  30411577 gggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaag 30411522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 11726762 - 11726700
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa 246  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  11726762 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaa 11726700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 10329894 - 10329832
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa 246  Q
    |||||| | |||||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  10329894 ggagggaaaggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaa 10329832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 37275944 - 37276007
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| | |||||||||||||| |||||||||||||| |||| |||||||| |||||||||||    
T  37275944 ggagggaaaggaaggggagatatttcaattaaatatatgtttggttcaaatggtgggagggaag 37276007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 35384171 - 35384219
Alignment:
Q  199 ggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||||    
T  35384171 ggagatatatcaattaaatatatgtttggttcaaatgatgggacggaag 35384219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 37275397 - 37275334
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| | |||| ||||||||| |||||||||||||| |||| |||||||| |||||||||||    
T  37275397 ggagggaaaggaatgggagatatttcaattaaatatatgtttggttcaaatggtgggagggaag 37275334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 35384115 - 35384154
Alignment:
Q  163 ggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  35384115 ggggaggggaggggttttaatggaggggagggaaagggag 35384154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 25595669 - 25595631
Alignment:
Q  164 gggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  25595669 gggaggggaggggttttaatggaggggagggaaagggag 25595631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 18227319 - 18227395
Alignment:
Q  181 aatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaat 257  Q
    ||||||||| || ||| ||||| |||||||||||||||||| |||| |||||||||||||||||| | |||||||||    
T  18227319 aatggagggaagagaatgggaggtatatcaattaaatatatgtttggttcaaatgatgggagggacgggattttaat 18227395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 11455106 - 11455169
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||    
T  11455106 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgataggagggaag 11455169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 46485675 - 46485612
Alignment:
Q  184 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||||| |||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||    
T  46485675 ggagggaagggaaggggagatattttaattaaatatatgtttggttcaaatgatgggagggaag 46485612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 46485712 - 46485672
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  46485712 aggggaggggaggggttttaatggaggggagggaaagggag 46485672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 27987 - 28048
Alignment:
Q  186 aggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 247  Q
    |||| ||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||    
T  27987 agggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 28048  T

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Target: scaffold0155; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 27943 - 27983
Alignment:
Q  162 aggggaggggagtggttttaatggaggggagggaaggggag 202  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  27943 aggggaggggaggggttttaatggaggggagggaaagggag 27983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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