View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_high_34 (Length: 246)
Name: NF9388A_high_34
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 32724922 - 32724718
Alignment:
| Q |
23 |
gtctagacataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtt |
122 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |
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| T |
32724922 |
gtcttgacataagaaccatacttttttctctgaaccatgaaatgctgagaaagaatcttttaacatccattaccttcaacacctttctaaaaagcctgtt |
32724823 |
T |
|
| Q |
123 |
aacccaaataacttgtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcat |
222 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
32724822 |
aacccaaataacttatgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccataatctctctatcattcttgtcttctcat |
32724723 |
T |
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| Q |
223 |
gtttc |
227 |
Q |
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||||| |
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| T |
32724722 |
gtttc |
32724718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 32723453 - 32723264
Alignment:
| Q |
39 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataactt |
136 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||| | |||| || |||||||||| |
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| T |
32723453 |
catactttttcatctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttcaacacctttctcaaaaacatgttataactcaaataactt |
32723354 |
T |
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| Q |
137 |
gtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgttt |
226 |
Q |
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||||||||||| ||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
32723353 |
gtgtcaccattaatataaaacaaaaattactgtttctctactaaacctgtaaacccatcatctctctatctttcctgtcttctcatgttt |
32723264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 4002081 - 4001942
Alignment:
| Q |
23 |
gtctagacataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtt |
122 |
Q |
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|||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
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| T |
4002081 |
gtctaggcataagaaccatacttttttctctaaaccatgaaattatgagaaagaatcttttaacatccactaccttcaacatctttctcaaaaacatgtt |
4001982 |
T |
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| Q |
123 |
aacccaaataacttgtgtcaccattgatacaaaacaaaaa |
162 |
Q |
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||||||||||||||| || |||||||||| |||| ||||| |
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| T |
4001981 |
aacccaaataacttgcgttaccattgataaaaaaaaaaaa |
4001942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 15720179 - 15719989
Alignment:
| Q |
39 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataactt |
136 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||| | |||| ||||||||||||| |
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| T |
15720179 |
catactttttcatctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttcaacacctttctcaaaaacttgttataacccaaataactt |
15720080 |
T |
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| Q |
137 |
gtgtcaccattgatacaaaacaaaaa-ttactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgttt |
226 |
Q |
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||||||||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||||||| |
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| T |
15720079 |
gtgtcaccattaatacaaaacaaaaaattactctttctctactaaacctgtacacccatcatctctctatctttcttgtcttctcatgttt |
15719989 |
T |
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