View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_high_4 (Length: 501)
Name: NF9388A_high_4
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 109 - 497
Target Start/End: Original strand, 20597615 - 20598004
Alignment:
| Q |
109 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597615 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttca |
20597714 |
T |
|
| Q |
209 |
tgtcaacctgcaaagatggtcttgtgactgcaggaaatggctactaataggattgccctgctgtcatgctatttcatgtatgaagaagttcgacatgaac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597715 |
tgtcaacctgcaaagatggtcttgtgactgcaggaaatggctactaacaggattgccctgctgtcatgctatttcatgtatgaagaagttcgacatgaac |
20597814 |
T |
|
| Q |
309 |
atatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagtttatggcaaagga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597815 |
atatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagtttatggcaaagga |
20597914 |
T |
|
| Q |
409 |
ctgagtacactaatcttcagccaccacccat-nnnnnnnncaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgtt |
497 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597915 |
ctgagtacactgatcttcagccaccacccataaaaaaaaacaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgtt |
20598004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 20597432 - 20597514
Alignment:
| Q |
17 |
ggacatcagagtgtacttgatggagagatgggaagcaaacaggcagaaagctgcaatgttgaaggatggtgtgttacccaaca |
99 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20597432 |
ggacatcagagtgtacctgatggagagatgggaagcaaacaggcagaaagctgcaatgttggaggatggtgtgttacccaaca |
20597514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 111 - 497
Target Start/End: Original strand, 8698618 - 8699003
Alignment:
| Q |
111 |
agtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttcatg |
210 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
8698618 |
agtagcgatactaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttagacatgtttctttaactggtcacaagtttcatg |
8698717 |
T |
|
| Q |
211 |
tcaacctgcaaagatggtcttgtgactgcaggaaatggctactaataggattgccctgctgtcatgctatttcatgtatgaagaagttcgacatgaacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8698718 |
tcaacctgcaaagatggtcttgtgactgcaggaaatggttactaacaggattgccctgctgtcatgctatttcatgtatgaagaagttcgacatgaacat |
8698817 |
T |
|
| Q |
311 |
atttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagtttatggcaaaggact |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8698818 |
atttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttactctagttccatttatccggctaatggtcaaagtttatggcaaaggact |
8698917 |
T |
|
| Q |
411 |
gagtacactaatcttcagccaccacccatnnnnnnnncaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgtt |
497 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8698918 |
gagtacactgatcttcagccaccacccat-caaaaaacaacctggtagaccaaaaaagagaagaaacaaggatgctaatgaattgtt |
8699003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 8698435 - 8698514
Alignment:
| Q |
20 |
catcagagtgtacttgatggagagatgggaagcaaacaggcagaaagctgcaatgttgaaggatggtgtgttacccaaca |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8698435 |
catcagagtgtacctgatggagagatgggaagcaaacaggcagaaagctgcaatgttggaggatggtgtgttacccaaca |
8698514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 37101878 - 37101837
Alignment:
| Q |
24 |
agagtgtacttgatggagagatgggaagcaaacaggcagaaa |
65 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
37101878 |
agagtgtacctgatggagagatgggaagcaaataggcagaaa |
37101837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University