View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_10 (Length: 487)
Name: NF9388A_low_10
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Complemental strand, 45930162 - 45929687
Alignment:
| Q |
12 |
tgttcaagccagtcagtttttatggatactttatcatcgtgaaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagcc |
111 |
Q |
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| T |
45930162 |
tgttcgagccagtcagtttttatggatactttatcatcgtgaaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagcc |
45930063 |
T |
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| Q |
112 |
ctccaagaagacgcacactgacctcaaaagtaattctaggtgatataatgaatggactatccgtaacccattcctgaaaacaataaatcaatatagggat |
211 |
Q |
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| T |
45930062 |
ctccaagaagacgcacactgacctcaaaagtaattctaggtgatataatgaatggactatccgtaacccattcctgaaaacaataaatcaatatagggat |
45929963 |
T |
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| Q |
212 |
tttccagtgattttgctgtaattgcaaactttctgcaaatctcagacatgtgaaggtaggctagctaatgataggatctgcaaagcccatattttctaag |
311 |
Q |
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| T |
45929962 |
tttccagtgattttgctgtaagtgcaaactttctgcaaatctcagacatgtgaaggtaggctagctaatgatacgatctgcaaagcccatattttctaag |
45929863 |
T |
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| Q |
312 |
ctgcaatttcaatagtatcctccattgtaaagcacaagtgttcaaaattttgtcaaacttttttgaccaaacttgacacttcttttaaccggccttttac |
411 |
Q |
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| T |
45929862 |
ctgcaatttcaatagtatcctccattgtaaagcacaagtgttcaaaattttgtcaaacttttttgaccaaacttgacacttcttttaaccggccttttac |
45929763 |
T |
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| Q |
412 |
cagaacatatgcatacagacaaagtcatagtgatcgatcaaaagaaagaaataaagagtagaaaactgcttgctca |
487 |
Q |
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| T |
45929762 |
cagaacatatgcatacagacaaagtcatagtgatcgatcaaaagaaagaaataaagagtagaaaactgcttgctca |
45929687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 28076238 - 28076100
Alignment:
| Q |
53 |
aaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagccctccaagaagacgcacactgacctcaaaagtaattctaggt |
152 |
Q |
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| T |
28076238 |
aaagacatgactgtttctcttaaggatagtagctatcgtatatcccaaggccattagtccaccaaggaggcgcacactgacctcaaaagtaattctcggt |
28076139 |
T |
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| Q |
153 |
gatataatgaatggactatccgtaacccattcctgaaaa |
191 |
Q |
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| T |
28076138 |
gatatgacaaagggactatctgtcacccattcctgaaaa |
28076100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 29536945 - 29536842
Alignment:
| Q |
54 |
aagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagccctccaagaagacgcacactgacctcaaaagtaattctaggtg |
153 |
Q |
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| T |
29536945 |
aagacatggctacttcttttaagaatagttgctattgtgtatccaagggccatcagtccaccaagaagacgcacactgaccgcaaaagtaattctcggtg |
29536846 |
T |
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| Q |
154 |
atat |
157 |
Q |
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|||| |
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| T |
29536845 |
atat |
29536842 |
T |
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