View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_118 (Length: 282)
Name: NF9388A_low_118
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_118 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 53513817 - 53513541
Alignment:
| Q |
1 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53513817 |
gaaggtggtgagactgtatttcctgatgctcagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
53513718 |
T |
|
| Q |
101 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53513717 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaattattaaaaactgtaaatggttcaaccctaaaata |
53513618 |
T |
|
| Q |
201 |
tgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatatatattttcttaatgttgaatgt |
277 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53513617 |
tgcatatatactctattaaaaacaatcaatagattaatcagttggatccaaatatatattttcttaatgttgaatgt |
53513541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 53510208 - 53509954
Alignment:
| Q |
1 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| | | |||||||||||||| | ||| | | |||||||||||||||||||||||||| || | |
|
|
| T |
53510208 |
gaaggtggtgagactgtatttcctaatgctaagcctaacataaattctgtatccaaatatcctgaaaagggtctatcagtgaaaccaaaaatgggtgatg |
53510109 |
T |
|
| Q |
101 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaata |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | || | ||||||| ||||||| |
|
|
| T |
53510108 |
ctctgctgtttcggagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaata |
53510009 |
T |
|
| Q |
201 |
tgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatat |
255 |
Q |
| |
|
|| ||| || |||||||||| |||||| || ||||||| ||||||||| |||||| |
|
|
| T |
53510008 |
tgtatacattctctattaaacacaatctatagattaatgagttggatctaaatat |
53509954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 53524117 - 53523948
Alignment:
| Q |
1 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatccaaatgtt---ctggagatggtctatcagtgaaaccaaaaatgggcg |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||| | ||| || ||||||||| |||||||||| |
|
|
| T |
53524117 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtttagtagtgaaaccgaaaatgggcg |
53524018 |
T |
|
| Q |
98 |
acgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaact |
167 |
Q |
| |
|
| |||||||||||||||||| | |||||||||||| |||||||||| |||| ||||| ||||||||||| |
|
|
| T |
53524017 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaact |
53523948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 53547659 - 53547540
Alignment:
| Q |
70 |
ggtctatcagtgaaaccaaaaatgggcgacgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactat |
169 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
53547659 |
ggtctatcactgaaaccaaaaatgggtgatgctctgctgttttggagcatgaggccagatgccacactagatgcatccagtttacacggttagggactat |
53547560 |
T |
|
| Q |
170 |
taaaaactgtaaatggttca |
189 |
Q |
| |
|
|||| ||| ||| ||||||| |
|
|
| T |
53547559 |
taaatactttaactggttca |
53547540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University