View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_119 (Length: 282)
Name: NF9388A_low_119
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_119 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 39932532 - 39932798
Alignment:
| Q |
16 |
atgcattgagaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcga |
115 |
Q |
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| T |
39932532 |
atgcattaagaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcga |
39932631 |
T |
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| Q |
116 |
cataatacctacaacttctctcaattctaccatgtccccatgaataggaccccgcccataacacactcgacatatccaagacatattcctacaggtaaag |
215 |
Q |
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| T |
39932632 |
cataatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccgtaacacgatcgacatatccaagacgtattcctacaggtaaag |
39932731 |
T |
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| Q |
216 |
ggagttcaaataaacatgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttga |
282 |
Q |
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| T |
39932732 |
ggagttcgaataaatatgtgtttgaaaagttatgaatcgattgataagtccaattccaataccttga |
39932798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 117 - 282
Target Start/End: Original strand, 18148679 - 18148849
Alignment:
| Q |
117 |
ataatacctacaacttctctcaattctaccatgtccccatgaataggaccccgcccataacacactcgacatatccaagacatattcctacaggtaaagg |
216 |
Q |
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| T |
18148679 |
ataatacctacagcttctcccaattctaccaggtccccatgaataggactccgcccataacacaatcggcagatccaagacgtattcctacaggtaaagg |
18148778 |
T |
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| Q |
217 |
gagttcaaataaaca-----tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttga |
282 |
Q |
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| T |
18148779 |
gggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttga |
18148849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 49069112 - 49069072
Alignment:
| Q |
138 |
aattctaccatgtccccatgaataggaccccgcccataaca |
178 |
Q |
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| T |
49069112 |
aattctaccaggtccccatgaataggactccgcccataaca |
49069072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 34210368 - 34210332
Alignment:
| Q |
246 |
tatgaatcgattgataagtccaattcgaataccttga |
282 |
Q |
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| T |
34210368 |
tatgaatcgattgataagtccaattccaatatcttga |
34210332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 12952873 - 12952823
Alignment:
| Q |
232 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttga |
282 |
Q |
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| T |
12952873 |
tgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttga |
12952823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 2363420 - 2363376
Alignment:
| Q |
232 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaata |
276 |
Q |
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| T |
2363420 |
tgtgtttgaaaagctatgaactgattgataagtccaattccaata |
2363376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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