View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_121 (Length: 280)

Name: NF9388A_low_121
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_121
NF9388A_low_121
[»] chr1 (5 HSPs)
chr1 (24-256)||(29467152-29467384)
chr1 (22-230)||(29452676-29452884)
chr1 (22-272)||(29442684-29442934)
chr1 (25-269)||(29423791-29424035)
chr1 (215-268)||(29463510-29463563)
[»] chr2 (15 HSPs)
chr2 (23-256)||(14550910-14551143)
chr2 (154-267)||(12005616-12005729)
chr2 (155-258)||(12018381-12018484)
chr2 (154-243)||(11986979-11987068)
chr2 (157-243)||(12012047-12012133)
chr2 (199-244)||(9365197-9365242)
chr2 (198-258)||(8579035-8579095)
chr2 (23-78)||(8572827-8572882)
chr2 (206-259)||(9275057-9275110)
chr2 (205-264)||(10372392-10372451)
chr2 (206-264)||(10348313-10348371)
chr2 (206-259)||(8573046-8573099)
chr2 (206-259)||(9283731-9283784)
chr2 (198-259)||(10336371-10336432)
chr2 (23-75)||(9292699-9292751)
[»] chr8 (1 HSPs)
chr8 (205-265)||(41966263-41966323)
[»] scaffold0667 (1 HSPs)
scaffold0667 (206-252)||(5020-5066)
[»] chr4 (1 HSPs)
chr4 (202-230)||(561789-561817)
[»] chr3 (1 HSPs)
chr3 (206-254)||(37463039-37463087)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 256
Target Start/End: Original strand, 29467152 - 29467384
Alignment:
Q  24 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467152 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 29467251  T
Q  124 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatcc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  29467252 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatcc 29467351  T
Q  224 gtaaacaccggattatcccttttccccctattc 256  Q
    ||||||| |||||||| |||  || ||||||||    
T  29467352 gtaaacatcggattattcctaatctccctattc 29467384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 29452676 - 29452884
Alignment:
Q  22 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 121  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452676 caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 29452775  T
Q  122 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 221  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| |||| || ||||||  ||||||||||||||||||||||||||    
T  29452776 ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttctggaaccctaacat 29452875  T
Q  222 ccgtaaaca 230  Q
    |||||||||    
T  29452876 ccgtaaaca 29452884  T

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Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 29442684 - 29442934
Alignment:
Q  22 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 121  Q
    ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || ||||||||||  |||    
T  29442684 caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc 29442783  T
Q  122 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 221  Q
    |||||| |   |||| ||||  ||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442784 ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 29442883  T
Q  222 ccgtaaacaccggattatcccttttccccctattcctactcctcaacacca 272  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  29442884 ccgtaaacaccggattatcccctttcctcctattcctactcctcaacacca 29442934  T

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Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 29424035 - 29423791
Alignment:
Q  25 aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 124  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | |||||||||||| |||||    
T  29424035 aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt 29423936  T
Q  125 tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccg 224  Q
    |||||  | |||||||||||||||||||| |||| ||||||||||||||||||||| | | |||| ||| || |||||||||||||||||||| |||| |    
T  29423935 tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttctggaaccctaccatctg 29423836  T
Q  225 taaacaccggattatcccttttccccctattcctactcctcaaca 269  Q
    |||||| || ||||||||||  | |||||||||||| ||||||||    
T  29423835 taaacatcgcattatcccttccctccctattcctacccctcaaca 29423791  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 29463510 - 29463563
Alignment:
Q  215 ctaacatccgtaaacaccggattatcccttttccccctattcctactcctcaac 268  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  29463510 ctaacatccgtaaacattggattatcccttatccccctattcctactcctcaac 29463563  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 14551143 - 14550910
Alignment:
Q  23 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 122  Q
    |||||||||||||| ||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551143 aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 14551044  T
Q  123 tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatc 222  Q
    |||| ||  |  ||||||||||||||||||| |||||||||||||||| ||||||| ||| |  |||||||  | ||| ||||| |||||||||||||||    
T  14551043 tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttatggaaccctaacatc 14550944  T
Q  223 cgtaaacaccggattatcccttttccccctattc 256  Q
    |||||||| || |||||||||  || ||||||||    
T  14550943 cgtaaacatcgcattatccctgatctccctattc 14550910  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 12005616 - 12005729
Alignment:
Q  154 ttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatcccttttcccccta 253  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||| |||||||||||||||||||||||||||| ||||||||||||  || |||||    
T  12005616 ttcggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctcccta 12005715  T
Q  254 ttcctactcctcaa 267  Q
    |||||| |||||||    
T  12005716 ttcctattcctcaa 12005729  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 12018381 - 12018484
Alignment:
Q  155 tcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatcccttttccccctat 254  Q
    ||||||||||||||||||| |||||||||||||||||    | ||||||||||||||||||| ||||||||||||| ||||||||||||  || ||||||    
T  12018381 tcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctat 12018480  T
Q  255 tcct 258  Q
    ||||    
T  12018481 tcct 12018484  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 11986979 - 11987068
Alignment:
Q  154 ttcggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccct 243  Q
    |||||||||||||||||||| |||||||||||||||||    | ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11986979 ttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 12012047 - 12012133
Alignment:
Q  157 ggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccct 243  Q
    |||||||||||||||||  ||||||||||||| ||  | | || ||| |||||||||||||||||||||||||| | ||||||||||    
T  12012047 ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccct 12012133  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 9365242 - 9365197
Alignment:
Q  199 atcgctttctggaaccctaacatccgtaaacaccggattatccctt 244  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatccctt 9365197  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 8579035 - 8579095
Alignment:
Q  198 aatcgctttctggaaccctaacatccgtaaacaccggattatcccttttccccctattcct 258  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||| || ||| ||||||    
T  8579035 aatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccccattcct 8579095  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
Q  23 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc 78  Q
    |||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  8572827 aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 9275110 - 9275057
Alignment:
Q  206 tctggaaccctaacatccgtaaacaccggattatcccttttccccctattccta 259  Q
    ||||||||||||||| | ||||||| |||||||||||||||| |||| ||||||    
T  9275110 tctggaaccctaacaccggtaaacatcggattatcccttttctccctcttccta 9275057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 10372451 - 10372392
Alignment:
Q  205 ttctggaaccctaacatccgtaaacaccggattatcccttttccccctattcctactcct 264  Q
    |||||||||||||||| |||||||||  || |||||||||||| |||| |||||| ||||    
T  10372451 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 10372392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 10348371 - 10348313
Alignment:
Q  206 tctggaaccctaacatccgtaaacaccggattatcccttttccccctattcctactcct 264  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| |||| |||||| ||||    
T  10348371 tctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattcct 10348313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 8573046 - 8573099
Alignment:
Q  206 tctggaaccctaacatccgtaaacaccggattatcccttttccccctattccta 259  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| |||| ||||||    
T  8573046 tctggaaccctaacacccgtaaacatcacattatcccttttctccctcttccta 8573099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 9283731 - 9283784
Alignment:
Q  206 tctggaaccctaacatccgtaaacaccggattatcccttttccccctattccta 259  Q
    |||||||| |||||| |||||||||  ||||||||||||||| |||| ||||||    
T  9283731 tctggaacactaacacccgtaaacattggattatcccttttctccctcttccta 9283784  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 10336432 - 10336371
Alignment:
Q  198 aatcgctttctggaaccctaacatccgtaaacaccggattatcccttttccccctattccta 259  Q
    |||||| ||||| || |||| |||||||||||| ||||||||||||| || |||| ||||||    
T  10336432 aatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttccta 10336371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
Q  23 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 75  Q
    ||||||||||||| || | |||||||||||||||||| | |||| ||||||||    
T  9292751 aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 41966263 - 41966323
Alignment:
Q  205 ttctggaaccctaacatccgtaaacaccggattatcccttttccccctattcctactcctc 265  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||    
T  41966263 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcctc 41966323  T

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Target: scaffold0667 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 5066 - 5020
Alignment:
Q  206 tctggaaccctaacatccgtaaacaccggattatcccttttccccct 252  Q
    ||||||||||||||||||||||||| |  ||||||||||||| ||||    
T  5066 tctggaaccctaacatccgtaaacatcacattatcccttttctccct 5020  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 561817 - 561789
Alignment:
Q  202 gctttctggaaccctaacatccgtaaaca 230  Q
    |||||||||||||||||||||||||||||    
T  561817 gctttctggaaccctaacatccgtaaaca 561789  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 37463087 - 37463039
Alignment:
Q  206 tctggaaccctaacatccgtaaacaccggattatcccttttccccctat 254  Q
    |||||||||||||||  |||||||| | |||||||||||||| ||||||    
T  37463087 tctggaaccctaacacacgtaaacatctgattatcccttttctccctat 37463039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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