View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_124 (Length: 277)
Name: NF9388A_low_124
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_124 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 48670857 - 48670610
Alignment:
| Q |
23 |
cattgatctttcttttccttgataccaattaaatccaaccatttcggtactcacaacaacagcatagttaccaggattagattgaagtatatccctagcc |
122 |
Q |
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| T |
48670857 |
cattgatctttcttttccttgataccaattaaatccaaccatttcggtactcacaacaacagcatagttaccaggattagattgaagtatatccctagcc |
48670758 |
T |
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| Q |
123 |
aaatcaacagcaataattccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatttataatcatggctgaca |
222 |
Q |
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| T |
48670757 |
aaatcaacagcaataattccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatttataatcatggctgaca |
48670658 |
T |
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| Q |
223 |
atgatggtgttggattgaatatgctacaatttactacaagaacaccaa |
270 |
Q |
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| T |
48670657 |
atgatggtgttggattgaatatgctacaatttactacaagaacaccaa |
48670610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 15237261 - 15237164
Alignment:
| Q |
141 |
ccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatttataatcatggctgacaatgatggtgttggatt |
238 |
Q |
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| T |
15237261 |
ccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggatt |
15237164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 34052096 - 34052056
Alignment:
| Q |
135 |
ataattccagcactacaacccataccaccaagattataact |
175 |
Q |
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| T |
34052096 |
ataagtccagcactacaacccataccaccaagattataact |
34052056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 10277483 - 10277401
Alignment:
| Q |
123 |
aaatcaacagcaataattccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatt |
205 |
Q |
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||||| || ||||||| |||||||| || |||||||||| ||||||||| ||||||||||||| || | ||||||||||| |
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| T |
10277483 |
aaatccaccgcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgatt |
10277401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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