View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_13 (Length: 468)
Name: NF9388A_low_13
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 145 - 273
Target Start/End: Complemental strand, 4111577 - 4111449
Alignment:
| Q |
145 |
aatatctcatatatatcagataatccataatctcaacaacatgtctcaaatctcataaatatatcaacaacaagttctcagcataatccaaaagtaaatg |
244 |
Q |
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| T |
4111577 |
aatatcttatatatatcagataatccataatctcaacaacatgtctcaaatctcataaatatatcaacaacaagttctcaccataatccaaaagtaaatg |
4111478 |
T |
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| Q |
245 |
aaaaatagaaactcttgaaacgtcataat |
273 |
Q |
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| T |
4111477 |
aaaaatagaaactattgacacgtcataat |
4111449 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 28579992 - 28579934
Alignment:
| Q |
148 |
atctcatatatatcagata-atccataatctcaacaacatgtctcaaatctcataaata |
205 |
Q |
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| T |
28579992 |
atctcaaatatctcagatacatccagaatatcaacaacaagtctcaaatctcataaata |
28579934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 5699591 - 5699530
Alignment:
| Q |
179 |
aacaacatgtctcaaatctcataaatatatcaacaaca-agttctcagcataatccaaaagt |
239 |
Q |
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| T |
5699591 |
aacaacatgtctcaaatctcatatatacatcaacaacagagttctcagcataatccaaaagt |
5699530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 25234375 - 25234453
Alignment:
| Q |
163 |
gataatccataatctcaacaacatgtctcaaatctcataaatatatcaacaac-aagttctcagcataatccaaaagtaaat |
243 |
Q |
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| T |
25234375 |
gataatccataatctcaacaa---gtttcaaatctcaaaaatacatcatcaacaaagtactcaacataatccaaaagtaaat |
25234453 |
T |
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