View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_133 (Length: 271)

Name: NF9388A_low_133
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_133
NF9388A_low_133
[»] chr3 (6 HSPs)
chr3 (1-253)||(11897148-11897400)
chr3 (1-254)||(26432593-26432846)
chr3 (97-254)||(23424497-23424654)
chr3 (100-254)||(38647179-38647333)
chr3 (139-254)||(53608336-53608451)
chr3 (139-188)||(49149802-49149851)
[»] chr8 (4 HSPs)
chr8 (1-253)||(23132480-23132732)
chr8 (97-247)||(26587230-26587380)
chr8 (1-159)||(14760016-14760174)
chr8 (226-254)||(38348466-38348494)
[»] chr1 (5 HSPs)
chr1 (1-253)||(20284849-20285101)
chr1 (88-255)||(50236550-50236717)
chr1 (100-255)||(50451893-50452048)
chr1 (139-197)||(23465403-23465461)
chr1 (142-251)||(1524969-1525078)
[»] chr2 (11 HSPs)
chr2 (1-253)||(14653575-14653827)
chr2 (100-249)||(26791322-26791471)
chr2 (103-254)||(35135219-35135370)
chr2 (103-254)||(40328174-40328325)
chr2 (88-197)||(16322502-16322611)
chr2 (103-176)||(3779048-3779121)
chr2 (100-176)||(573266-573342)
chr2 (95-181)||(42403209-42403295)
chr2 (100-245)||(177504-177649)
chr2 (115-176)||(19265490-19265551)
chr2 (100-151)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (100-190)||(75967-76057)
[»] chr4 (4 HSPs)
chr4 (103-254)||(54477407-54477558)
chr4 (97-249)||(46784469-46784621)
chr4 (163-254)||(33803974-33804065)
chr4 (100-181)||(3881787-3881868)
[»] chr5 (3 HSPs)
chr5 (100-206)||(32874457-32874563)
chr5 (100-254)||(7817131-7817285)
chr5 (95-197)||(6641008-6641110)
[»] chr6 (4 HSPs)
chr6 (97-254)||(24893833-24893990)
chr6 (97-197)||(24990660-24990760)
chr6 (100-207)||(27852952-27853059)
chr6 (91-197)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (94-197)||(16769956-16770059)
chr7 (98-197)||(27781628-27781727)
chr7 (103-173)||(1353794-1353864)
chr7 (100-245)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 11897400 - 11897148
Alignment:
Q  1 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  11897400 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaa 11897301  T
Q  101 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897300 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 11897201  T
Q  201 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897200 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 26432593 - 26432846
Alignment:
Q  1 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa 100  Q
    |||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||  ||| || ||||| |||||||| || |    
T  26432593 tcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggata 26432692  T
Q  101 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 200  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  26432693 gcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaag 26432792  T
Q  201 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
    |||||||||  | |  ||||  || |||||||||||||| ||||||||||||||    
T  26432793 tatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 23424654 - 23424497
Alignment:
Q  97 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 196  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc 23424555  T
Q  197 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 254  Q
    | | ||| ||| ||   |||| || | || ||||| |||||||||||||||||||||||    
T  23424554 ataatattgag-aatgtggaggaggtgacacaatgtatgatgagcttgatggtgatgtc 23424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 38647179 - 38647333
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    |||||||||||||| |  ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| ||||  || || ||||||||||    
T  38647179 agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa 38647278  T
Q  200 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
    | |||||| |  | |  || |  || |||||||||||||||||||||||||||||    
T  38647279 gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 53608336 - 53608451
Alignment:
Q  139 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatga 238  Q
    |||||||| |||| ||| ||||| |||||| ||||||  ||||  ||||| || |||||||| |||||| |  |||  || |  || |||||||||||||    
T  53608336 ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga 53608435  T
Q  239 gcttgatggtgatgtc 254  Q
    ||||||||||||||||    
T  53608436 gcttgatggtgatgtc 53608451  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
Q  139 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 188  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  49149802 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 49149851  T

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Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23132480 - 23132732
Alignment:
Q  1 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  23132480 tcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaa 23132579  T
Q  101 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132580 gcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 23132679  T
Q  201 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 253  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23132680 tatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 26587380 - 26587230
Alignment:
Q  97 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 196  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  197 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgg 247  Q
    |||| || | | |  |||  ||||  ||||||||||||||||| |||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatgg 26587230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  1 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa 100  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| || ||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  101 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 159  Q
    |||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 38348494 - 38348466
Alignment:
Q  226 caatgcatgatgagcttgatggtgatgtc 254  Q
    |||||||||||||||||||||||||||||    
T  38348494 caatgcatgatgagcttgatggtgatgtc 38348466  T

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Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 20285101 - 20284849
Alignment:
Q  1 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  20285101 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaa 20285002  T
Q  101 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||   ||||||||||||||    
T  20285001 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaag 20284902  T
Q  201 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20284901 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 255
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  88 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 187  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  188 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtcc 255  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||| ||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 50452048 - 50451893
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| || ||||| |    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata 50451949  T
Q  200 gtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgtcc 255  Q
      |||||| || | |||| || | || ||||||||||| || |||||||||||||||    
T  50451948 agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  139 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 197  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| ||||| || |||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 1525078 - 1524969
Alignment:
Q  142 tcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagct 241  Q
    |||||||| || || || || |||||||||||||| || || ||||| || |||||||| |||||| |   |||||| |  || |||||||||||||| |    
T  1525078 tcaccttgccgaagaccgtgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgatgagtt 1524979  T
Q  242 tgatggtgat 251  Q
    ||||||||||    
T  1524978 tgatggtgat 1524969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 14653575 - 14653827
Alignment:
Q  1 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| || |    
T  14653575 tcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggata 14653674  T
Q  101 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14653675 gcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaag 14653774  T
Q  201 tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 253  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14653775 tatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  200 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtg 249  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 35135219 - 35135370
Alignment:
Q  103 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 202  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| |  | |||||| || ||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  203 tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
    | ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 254
Target Start/End: Complemental strand, 40328325 - 40328174
Alignment:
Q  103 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 202  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| |  | |||||| || ||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  203 tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
    | ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  88 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 187  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| ||||||||||  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  188 tcccgttcca 197  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
Q  103 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 176  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 176  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  95 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 181  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| |||||||||||||  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||||| |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  200 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 245  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
Q  115 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 176  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 19265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 151  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc 190  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  103 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 202  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  203 tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  97 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 196  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||||| ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  197 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtg 249  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 33804065 - 33803974
Alignment:
Q  163 gaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
    |||||||||||||| ||||  ||||| || ||||| |||||||||||  |||  || |  || |||||||||||||||||||||||||||||    
T  33804065 gaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatgagcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 181  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  200 gtataga 206  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  200 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgtc 254  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 6641008 - 6641110
Alignment:
Q  95 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt 194  Q
    ||||||| ||||||||||| |  ||||| || || || || | ||||||||||| ||||||||||||||  ||||||||||| | ||  ||||| |||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt 6641107  T
Q  195 cca 197  Q
    |||    
T  6641108 cca 6641110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 254
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  97 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 196  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  197 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 254  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 24990660 - 24990760
Alignment:
Q  97 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 196  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  197 a 197  Q
    |    
T  24990760 a 24990760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || |||||||||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  200 gtatagag 207  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  91 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc 190  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||||| |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  191 cgttcca 197  Q
    | |||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
Q  94 gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgt 193  Q
    ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||||| ||| |||||| ||||||| ||||| || |    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  194 tcca 197  Q
    ||||    
T  16770056 tcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 27781628 - 27781727
Alignment:
Q  98 aaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 197  Q
    ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| |||||||||||  ||||| || || ||||  ||||||||||||||    
T  27781628 aaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
Q  103 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa 173  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||||| |||||||||    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa 1353864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  100 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 199  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| |  || || ||||||||||| |  ||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  200 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 245  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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