View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_135 (Length: 270)
Name: NF9388A_low_135
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_135 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold1361 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 10909522 - 10909266
Alignment:
| Q |
12 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
10909522 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttattaaccaagggttttcttcacttcccaaacaaaatgacagggttagt |
10909423 |
T |
|
| Q |
112 |
tttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccg |
210 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909422 |
tttgcgaacgaaatggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccg |
10909323 |
T |
|
| Q |
211 |
aggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
10909322 |
aggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
10909266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 2409728 - 2409983
Alignment:
| Q |
15 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagtttt |
114 |
Q |
| |
|
|||| |||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
2409728 |
tggtgaagattttgatggtgagtggtgattttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttagtttt |
2409827 |
T |
|
| Q |
115 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgag |
212 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
2409828 |
gcgaacaaaatggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgag |
2409927 |
T |
|
| Q |
213 |
gtatcgtaacca-gctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||| |||| | ||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
2409928 |
gtatcataactaggctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
2409983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 734445 - 734605
Alignment:
| Q |
108 |
tagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaa |
205 |
Q |
| |
|
|||||| ||||||||| | ||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| | || ||||||||| |
|
|
| T |
734445 |
tagtttcgcgaacaaa-tagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaa |
734543 |
T |
|
| Q |
206 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
734544 |
ctccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
734605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 2409698 - 2409736
Alignment:
| Q |
22 |
gattgtggttgtgagtggtggttttgttggtggtgaaga |
60 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2409698 |
gattgtggtggtgggtggtggttttgttggtggtgaaga |
2409736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 42680553 - 42680809
Alignment:
| Q |
12 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagt |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | || |
|
|
| T |
42680553 |
atatggtaaagattgtggttatgagtggtggttttgttggtggtgaagacttgttaatcaagggttttcttcacttcccaaacaaaatgacggggtttgt |
42680652 |
T |
|
| Q |
112 |
tttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccg |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42680653 |
tttgcgaacaaaatggttacaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactttg |
42680752 |
T |
|
| Q |
211 |
aggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42680753 |
aggtatcgtaaccagctctgatgccaaatctggctcagggacaaaagaaaatgtaga |
42680809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 8733342 - 8733521
Alignment:
| Q |
90 |
caaacaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat |
188 |
Q |
| |
|
||||||||||||||| | |||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8733342 |
caaacaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgat |
8733441 |
T |
|
| Q |
189 |
tttt-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
8733442 |
tttttcgctcaaactcaactccgaggtattgtaaccagctctgatgccaaatctggctcagggacaaaagagaaggtaga |
8733521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 93 - 267
Target Start/End: Complemental strand, 19787116 - 19786940
Alignment:
| Q |
93 |
acaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
191 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19787116 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttactcacttgaaaactcactttccgttgatttt |
19787017 |
T |
|
| Q |
192 |
t-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |
|
|
| T |
19787016 |
ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctagctcagggacaaaaggaaaggtaga |
19786940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 3052598 - 3052371
Alignment:
| Q |
21 |
agattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagttttgcgaac |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||| |
|
|
| T |
3052598 |
agattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttagcgaac |
3052499 |
T |
|
| Q |
121 |
aaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgattttt--cgcacaaactcaactccgaggtatc |
217 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| ||||||| | |||||||||||||||||| ||| ||||||||||||| | || | |
|
|
| T |
3052498 |
aaaatggccgcaaagtgaagttttacgaaggcagctccttg------------cacactttccgttgattttttccgctcaaactcaactccaaagttac |
3052411 |
T |
|
| Q |
218 |
gtaaccagctctgatgccaaatatggctcaggaacaaaag |
257 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| ||||||| |
|
|
| T |
3052410 |
gtaaccagctctgatgtcaaatctggctgagggacaaaag |
3052371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 16534985 - 16535151
Alignment:
| Q |
93 |
acaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
191 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16534985 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt |
16535084 |
T |
|
| Q |
192 |
tc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag |
257 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
16535085 |
cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaag |
16535151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 16630677 - 16630511
Alignment:
| Q |
93 |
acaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
191 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16630677 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt |
16630578 |
T |
|
| Q |
192 |
tc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag |
257 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
16630577 |
cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaag |
16630511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 3053423 - 3053565
Alignment:
| Q |
15 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagtttt |
114 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| | |||||| |
|
|
| T |
3053423 |
tggtgaagattgtggtggtgagtggtggttttgttggtggtgaaaacttgttaaccaagggttttcctcacttcccaaacaaaatgacgatgttagttta |
3053522 |
T |
|
| Q |
115 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactc |
156 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
3053523 |
gcgaacaaaatggccgcaaagtgaagttttacgaaggcaactc |
3053565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 3933021 - 3932873
Alignment:
| Q |
122 |
aaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggtatcgt |
219 |
Q |
| |
|
|||| ||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
3933021 |
aaatagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgt |
3932922 |
T |
|
| Q |
220 |
aacc-agctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
3932921 |
aaccaagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
3932873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 21768935 - 21769077
Alignment:
| Q |
108 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
205 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||||| | || |||||||||||||| ||||||||||||||||||||| |||| ||| | ||||||||| |
|
|
| T |
21768935 |
tagtttcgcgaacaaa-tggctacaaagtgaagttttgagaaagcaactccttgctcgcttgaaaactcactttccgtttatttcttctctcaaactcaa |
21769033 |
T |
|
| Q |
206 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcagg |
249 |
Q |
| |
|
|||| |||||||||||| ||||||| | ||||| | ||||||| |
|
|
| T |
21769034 |
ctccaaggtatcgtaacttgctctgacgtcaaattttgctcagg |
21769077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 3933130 - 3933033
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta |
215 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| |||||| |||||| |
|
|
| T |
3933130 |
aaatggccgcaaagtgaagttttgagaaagcaactccttgctctcacttgaaaactcactctccgttgatttcttcgctcaaacacaactctgaggta |
3933033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 16534903 - 16534974
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16534903 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
16534974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 16630759 - 16630688
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16630759 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
16630688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 19787198 - 19787127
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
19787198 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
19787127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 8733263 - 8733334
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
8733263 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccattgattt |
8733334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 42277551 - 42277808
Alignment:
| Q |
12 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
42277551 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaacggttttcttcacttcccaaacaaaatgacagggttagt |
42277650 |
T |
|
| Q |
112 |
tttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactcc |
209 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42277651 |
tttgcaaacaaaatggccgcaaagtgaagttttactaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactcc |
42277750 |
T |
|
| Q |
210 |
gaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
42277751 |
gaggtatcgtaaccagctctgatatcaaatctggctcagggacaaaaggaaaggtaga |
42277808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 31487194 - 31487043
Alignment:
| Q |
118 |
aacaaaatggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggta |
215 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31487194 |
aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta |
31487095 |
T |
|
| Q |
216 |
tcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
31487094 |
tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
31487043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 31487263 - 31487186
Alignment:
| Q |
22 |
gattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatg |
100 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31487263 |
gattgtggtgatgagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcctaaacaaaatg |
31487186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 29742 - 29488
Alignment:
| Q |
15 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagtttt |
114 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
29742 |
tggtgaagattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttc |
29643 |
T |
|
| Q |
115 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgag |
212 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||||| ||||| |
|
|
| T |
29642 |
acgaacaaaatggccgtaaagtgaagttttacaaaggcaagtccttgctcacttgaaaacccactttccgttgatttttttgctcaaactcaacgccgag |
29543 |
T |
|
| Q |
213 |
gtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
29542 |
gtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
29488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1361 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold1361
Description:
Target: scaffold1361; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 48 - 267
Target Start/End: Complemental strand, 335 - 114
Alignment:
| Q |
48 |
ttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaag-tttaca |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
335 |
ttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggggttagttttacgaacaaaatggccgcaaagtgaagttttaca |
236 |
T |
|
| Q |
147 |
aaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
235 |
aaggcaactccttgctcacttgaaaactcacttttcgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgataccaaatctggct |
136 |
T |
|
| Q |
246 |
caggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||| ||||||| ||| ||||| |
|
|
| T |
135 |
cagggacaaaaggaaaggtaga |
114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 37208279 - 37208054
Alignment:
| Q |
33 |
tgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagttttgcgaacaaaatggccaca |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| || | |||||| ||||||||||||||| || |
|
|
| T |
37208279 |
tgagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggtggtgttagtttcgcgaacaaaatggccgca |
37208181 |
T |
|
| Q |
133 |
aagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaaccagctctg |
230 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37208180 |
aagtgaagttttacaaaggcaactccttgcgcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctg |
37208081 |
T |
|
| Q |
231 |
atgccaaatatggctcaggaacaaaag |
257 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
|
|
| T |
37208080 |
atgccaaatctggctcagggacaaaag |
37208054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 93 - 267
Target Start/End: Original strand, 11852025 - 11852201
Alignment:
| Q |
93 |
acaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
191 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11852025 |
acaaaatgacggtgttagttttgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgtaaactcactttccgtttatttt |
11852124 |
T |
|
| Q |
192 |
t-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
11852125 |
ttcgctcaaactcaactccgaggtatcataaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
11852201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 15469379 - 15469229
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgt |
219 |
Q |
| |
|
||||| |||||||||||||||| | || |||||| ||| |||||||||||| | || || |||||||| ||| | |||||||||||| |||||||| | |
|
|
| T |
15469379 |
aaatgaccacaaagtgaagttttgagaaagcaacttcttactcacttgaaaattgaccttttgttgatttcttctctcaaactcaactctgaggtatcat |
15469280 |
T |
|
| Q |
220 |
aaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtagaaaa |
270 |
Q |
| |
|
|||| ||||||||||||| | ||||||||| ||||||| ||| ||| |||| |
|
|
| T |
15469279 |
aacctgctctgatgccaattctggctcagggacaaaaggaaaggtaaaaaa |
15469229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 11851985 - 11852014
Alignment:
| Q |
161 |
ctcacttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11851985 |
ctcacttgaaaactcactttccgttgattt |
11852014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 37 - 267
Target Start/End: Complemental strand, 45162570 - 45162338
Alignment:
| Q |
37 |
tggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagttttgcgaacaaaatggccacaaagt |
136 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||| |
|
|
| T |
45162570 |
tggtggttttgttggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagt |
45162472 |
T |
|
| Q |
137 |
gaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatg |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
45162471 |
gaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataactaggctctgatg |
45162372 |
T |
|
| Q |
234 |
ccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
45162371 |
ccaaatctggctcagggacaaaaggaaaggtaga |
45162338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 42470432 - 42470627
Alignment:
| Q |
15 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagtttt |
114 |
Q |
| |
|
|||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
42470432 |
tggtgaagattgtggtggtgagcggtaattttgttggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttc |
42470531 |
T |
|
| Q |
115 |
gcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
42470532 |
acgaacaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact |
42470627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 120 - 267
Target Start/End: Complemental strand, 13774460 - 13774310
Alignment:
| Q |
120 |
caaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtat |
216 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| |
|
|
| T |
13774460 |
caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat |
13774361 |
T |
|
| Q |
217 |
cgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
13774360 |
cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
13774310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 42470634 - 42470794
Alignment:
| Q |
108 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
205 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42470634 |
tagtttcgcgaacaaa-tggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaa |
42470732 |
T |
|
| Q |
206 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
42470733 |
ctccgtggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
42470794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 24907984 - 24908099
Alignment:
| Q |
150 |
gcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
248 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||| ||||| | |
|
|
| T |
24907984 |
gcaactccttgctcacttaaaaactcactttctgttgatttcttcgctcaaactcaactctgaggtatcgtaacctgctctaataccaaatttggcttaa |
24908083 |
T |
|
| Q |
249 |
gaacaaaagaaaatgt |
264 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
24908084 |
ggacaaaaggaaatgt |
24908099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 13774599 - 13774528
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
13774599 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
13774528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 13774517 - 13774467
Alignment:
| Q |
93 |
acaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaagttt |
143 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
13774517 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt |
13774467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 39 - 267
Target Start/End: Complemental strand, 88735 - 88505
Alignment:
| Q |
39 |
gtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagttttgcgaacaaaatggccacaaagtga |
138 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
88735 |
gtggttttgttggtggtgaaaa-ttgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagtga |
88637 |
T |
|
| Q |
139 |
ag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatgcc |
235 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
88636 |
agttttacaaaggaaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccaggctctaatacc |
88537 |
T |
|
| Q |
236 |
aaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
88536 |
aaatctggctcagggacaaaaggaaaggtaga |
88505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 20642584 - 20642346
Alignment:
| Q |
20 |
aagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagttttgcgaa |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||| ||||| |
|
|
| T |
20642584 |
aagattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacagtgttagtttcgcgaa |
20642485 |
T |
|
| Q |
120 |
caaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatc |
217 |
Q |
| |
|
||||||||| |||||||||| ||| || | |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
20642484 |
caaaatggctgcaaagtgaagttttccacatgcaactccttgctcacttgaaaactcactttccgttgattttttcgctaaaactcgactccgaggtatc |
20642385 |
T |
|
| Q |
218 |
gtaaccagctctgatgccaaatatggctcaggaacaaaa |
256 |
Q |
| |
|
|||||||||| || || ||| | | ||||||| |||||| |
|
|
| T |
20642384 |
gtaaccagctttggtgtcaattcttgctcagggacaaaa |
20642346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 18965923 - 18966125
Alignment:
| Q |
15 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagtttt |
114 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| |
|
|
| T |
18965923 |
tggtgaagattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagagttttcttcacttcccaatcaaaatgacggtgttagtttc |
18966022 |
T |
|
| Q |
115 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgag |
212 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
18966023 |
ccgaacaaaatggccgcaaagtgaagttttccataggcaactccatgctcacttgaaaactcactttccgttgattttttcgctataactcaactccgag |
18966122 |
T |
|
| Q |
213 |
gta |
215 |
Q |
| |
|
||| |
|
|
| T |
18966123 |
gta |
18966125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 120 - 267
Target Start/End: Complemental strand, 4531144 - 4530994
Alignment:
| Q |
120 |
caaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtat |
216 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| |
|
|
| T |
4531144 |
caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat |
4531045 |
T |
|
| Q |
217 |
cgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
4531044 |
cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
4530994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 1701483 - 1701344
Alignment:
| Q |
121 |
aaaatggccacaaagtgaagtttac-aaaggcaactccttgctcacttgaaaactcac-tttccgttgattt-ttcgcacaaactcaactccgaggtatc |
217 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||| ||||||||||||| || ||| ||||||||| ||||| |||||| ||||| |||||||| |
|
|
| T |
1701483 |
aaaatggctgcaaagtgaagttttggaaaagcaactccttgttcacttgaaaacttactttttcgttgatttcttcgctcaaactgaactctgaggtatc |
1701384 |
T |
|
| Q |
218 |
gtaaccagctctgatgccaaatatggctcaggaacaaaag |
257 |
Q |
| |
|
||| ||||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
1701383 |
ttaatatgctctgatgtcaaatctggttcagggacaaaag |
1701344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 18966157 - 18966206
Alignment:
| Q |
188 |
tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaa |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18966157 |
tttttcgctcaaactcaactccgaggtatcgtaaccagttctgctgccaa |
18966206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 4531283 - 4531212
Alignment:
| Q |
122 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4531283 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
4531212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 4531201 - 4531151
Alignment:
| Q |
93 |
acaaaatgacggggctagttttgcgaacaaaatggccacaaagtgaagttt |
143 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
4531201 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt |
4531151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 4877512 - 4877317
Alignment:
| Q |
15 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggctagtttt |
114 |
Q |
| |
|
|||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4877512 |
tggtgaagattgtggtggtgagcggtaattttgttggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttc |
4877413 |
T |
|
| Q |
115 |
gcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
4877412 |
acgaacaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact |
4877317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 36379340 - 36379491
Alignment:
| Q |
118 |
aacaaaatggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta |
215 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36379340 |
aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta |
36379439 |
T |
|
| Q |
216 |
tcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
36379440 |
tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
36379491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 4877310 - 4877150
Alignment:
| Q |
108 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
205 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4877310 |
tagtttcgcgaacaaa-tggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaa |
4877212 |
T |
|
| Q |
206 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
267 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
4877211 |
ctccgtggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
4877150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 36379271 - 36379348
Alignment:
| Q |
22 |
gattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatg |
100 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36379271 |
gattgtggtgatgagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcctaaacaaaatg |
36379348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 7939030 - 7939104
Alignment:
| Q |
117 |
gaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattt |
190 |
Q |
| |
|
||||||||||| | |||||||| |||| |||| | ||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
7939030 |
gaacaaaatgggcgcaaagtgatgtttcacaaggacaactccttactcactggaaaactcactttccgtttattt |
7939104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 248
Target Start/End: Complemental strand, 64271 - 64134
Alignment:
| Q |
108 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
205 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||| || |||| |||||||| |||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
64271 |
tagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgctcaaactcaa |
64177 |
T |
|
| Q |
206 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcag |
248 |
Q |
| |
|
||| |||||| ||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
64176 |
ctctgaggtagcgtaacctgctttgatgtcaaatttggatcag |
64134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 248
Target Start/End: Complemental strand, 71603 - 71466
Alignment:
| Q |
108 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
205 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||| || |||| |||||||| |||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
71603 |
tagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgctcaaactcaa |
71509 |
T |
|
| Q |
206 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcag |
248 |
Q |
| |
|
||| |||||| ||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
71508 |
ctctgaggtagcgtaacctgctttgatgtcaaatttggatcag |
71466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University