View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_146 (Length: 263)
Name: NF9388A_low_146
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_146 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 37018532 - 37018303
Alignment:
| Q |
19 |
tacattgtcatttttggatcaaaataacataaa-tgtacacagagaggtgaaaagaatgcttcagctttgtattatccaaagtgtttttacatgatatat |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37018532 |
tacagtgtcatttttggatcaaaataacataaaatgtaaacaaagaggtgtaaagaatgcttcagctttgtattatccaaagtgtttttacatgatatat |
37018433 |
T |
|
| Q |
118 |
atgcaacactacataacacattcctatgttatgtgacaaattatagaaagctaattggagcaagaatattcagcaaaaactacgaatcacaatttggaaa |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37018432 |
atgcaacgctacataacacattcctatgttatgtgacaaattatagaaagctaattggagcaagaatatttagcaaaaactacgaatcacaatttggaaa |
37018333 |
T |
|
| Q |
218 |
actcaatccctcaaacctcacagcacgtga |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
37018332 |
actcaatccctcaaacctgacagcacgtga |
37018303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University