View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_154 (Length: 258)
Name: NF9388A_low_154
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_154 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 27913464 - 27913207
Alignment:
| Q |
1 |
aaaataagaacggaaatatttattgaaaatataaagatagttaataagcgtttgttaatatgtagttaaattgnnnnnnnaagtaggtagtttatttgtt |
100 |
Q |
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| T |
27913464 |
aaaataagaacggaaatatttattgaaaatataaagatagttaataagcgtttgttaatatgtagttaaattgtttttttaagtaggtagtttatttgtt |
27913365 |
T |
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| Q |
101 |
aattcatcacaggcgctctatatagagaatctcatatactcatttattatctttttcttttaacaatttttcaatatgaattctaagaatttttcccgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27913364 |
aattcatcacaggcgctctatatagagaatctcatatactcatttattatctttttcttttaacaatttttcaatatgaattctaagaatttttctcgtc |
27913265 |
T |
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| Q |
201 |
tatctttgttatctcatcgtatgagatgaatcttcatatgtttgatcttgtgatttgt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27913264 |
tatctttgttatctcatcgtatgagatgaatcttcatatgtttgatcttgtgatttgt |
27913207 |
T |
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