View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_165 (Length: 251)

Name: NF9388A_low_165
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_165
NF9388A_low_165
[»] chr2 (2 HSPs)
chr2 (10-150)||(10386392-10386531)
chr2 (150-232)||(10386507-10386589)
[»] scaffold0055 (3 HSPs)
scaffold0055 (30-90)||(51992-52051)
scaffold0055 (30-90)||(67527-67586)
scaffold0055 (30-90)||(70447-70506)
[»] scaffold0052 (5 HSPs)
scaffold0052 (30-90)||(4539-4598)
scaffold0052 (30-90)||(19019-19078)
scaffold0052 (30-90)||(28291-28350)
scaffold0052 (30-90)||(48899-48958)
scaffold0052 (30-90)||(51491-51550)
[»] scaffold0021 (1 HSPs)
scaffold0021 (30-90)||(47161-47220)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 10386392 - 10386531
Alignment:
Q  10 atgatatgaacacataattcaataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatactatagtatttagataccgaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  10386392 atgatatgaacacataattcaataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatactatagtatttagaca-tgaca 10386490  T
Q  110 gtccaacaaactataatacatttgatgcgtcattcacaatt 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10386491 gtccaacaaactataatacatttgatgcgtcattcacaatt 10386531  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 10386507 - 10386589
Alignment:
Q  150 tacatttgatgcatcattcacaatttcacaatctaaattaaattataacgcatgcatgactttaatctttgagacaaatacat 232  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10386507 tacatttgatgcgtcattcacaatttcacaatctaaattaaattataaagcatgcatgactttaatctttgatacaaatacat 10386589  T

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Target: scaffold0055 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 51992 - 52051
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  51992 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 52051  T

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Target: scaffold0055; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 67527 - 67586
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  67527 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 67586  T

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Target: scaffold0055; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 70447 - 70506
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  70447 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 70506  T

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Target: scaffold0052 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 4539 - 4598
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  4539 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 4598  T

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Target: scaffold0052; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 19019 - 19078
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  19019 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 19078  T

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Target: scaffold0052; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 28291 - 28350
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  28291 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 28350  T

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Target: scaffold0052; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 48899 - 48958
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  48899 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 48958  T

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Target: scaffold0052; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 51491 - 51550
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  51491 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 51550  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 47161 - 47220
Alignment:
Q  30 aataaatgtatccgctttcaaaagtcggagtttgttgcacgtattagttttagaaatacta 90  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||| | ||||| |||||    
T  47161 aataaatgcatcc-cttccaaaagtcggggtttgttgcacgtattagctctagaattacta 47220  T

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