View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_167 (Length: 251)
Name: NF9388A_low_167
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_167 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3098493 - 3098724
Alignment:
| Q |
1 |
ataaccaaatttctttttattgcttcaaaaaaagtttcattagcacnnnnnnnntaaaatcccaaagaataataagaatttggaagatagaaagcatttg |
100 |
Q |
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| T |
3098493 |
ataaccaaatttctttttattgcttcaaaaaaagtttcattagcacaaaaaaaa-aaaatcccaaagaataataagattttggaagatagaaagcatttg |
3098591 |
T |
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| Q |
101 |
tgaggtaaaaatagtcctaaatcaaaatctgaatcattatcgatggacccaacccaatcaatannnnnnnnnaggcatgcatctaaacaattttgaagat |
200 |
Q |
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| T |
3098592 |
tgaggtaaaaatagtcctaaatcaaaatctgaatcattatcaatggacccaacccaatcaatatttttttttaggcatgcatctaaacaattttgaagat |
3098691 |
T |
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| Q |
201 |
ttattgattaagtattccattccattttgatgt |
233 |
Q |
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||||||||||| ||||| ||||||||||||||| |
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| T |
3098692 |
ttattgattaattattctattccattttgatgt |
3098724 |
T |
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