View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_169 (Length: 250)
Name: NF9388A_low_169
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_169 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32031319 - 32031091
Alignment:
| Q |
1 |
ttgccaaacaaatttacctttggcatcaattaaaaccatgttaccatttgagagtaacctaaaggcaacaacacctttattggaagtgtttgtttgccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32031319 |
ttgccaaacaaatttacctttggcatcaattaaaaccatgttaccatttgagagtaacctaaaggcaacaacacctttattggaagtgtttgtttgccaa |
32031220 |
T |
|
| Q |
101 |
acaattcttccatcagcattagccaacacaagatttccatcagcacctaatgaaaaagtaccattttcaccaactgggttgcctctatttgcttcccata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32031219 |
acaattcttccatcagcattagccaacacaagatttccatcagcacctaatgaaaaagtaccattttcaccaactggattgcctctatttgcttcccata |
32031120 |
T |
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| Q |
201 |
cccaccggaaaagctgctccgatcgttga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32031119 |
cccaccggaaaagctgctccgatcgttga |
32031091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32064454 - 32064221
Alignment:
| Q |
1 |
ttgccaaacaaatttacctttggcatcaattaaaaccatgttaccatttgagagtaacctaaaggcaacaacacctttattggaagtgtttgtttgccaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32064454 |
ttgccaaacaaatttatctttggcatcaattaaaaccatgttaccatttgagagtaacctaaatgcaacaacacctttattggaagtgtttgtttgccaa |
32064355 |
T |
|
| Q |
101 |
acaattcttccatcagcattagccaacacaagatttccatcagcacctaatgaaaaagtaccattttcaccaactgggttgcctctatttgcttcccata |
200 |
Q |
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| T |
32064354 |
acaattcttccatcagcattagccaacacaagatttccatcagcacctaatgaaaaagtaccattttcaccaactgggttgcctctatttgcttcccata |
32064255 |
T |
|
| Q |
201 |
cccaccggaaaagctgctccgatcgttgatgtcc |
234 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
32064254 |
cccaccggaaaagctgctccgatcgttgaagtcc |
32064221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 32071781 - 32071581
Alignment:
| Q |
7 |
aacaaatttacctttggcatcaattaaaaccatgttaccatttgagagtaacctaaaggcaacaacacctttattggaagtgtttgtttgccaaacaatt |
106 |
Q |
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|||||| ||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32071781 |
aacaaaattaactttagtatcaattaaaaccatgttaccatttgagagtaaccttaaggcaacaacacctttattggaagtgtttgtttgccaaacaatt |
32071682 |
T |
|
| Q |
107 |
cttccatcagcattagccaacacaagatttccatcagcacctaatgaaaaagtaccattttcaccaactgggttgcctctatttgcttcccatacccacc |
206 |
Q |
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||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
32071681 |
cttccatcatcattagcccacacaagatttccatcaacacctaatgaaaaagttgcattttcatcaactgggttgcctctatttgcttcccaaacccacc |
32071582 |
T |
|
| Q |
207 |
g |
207 |
Q |
| |
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| |
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|
| T |
32071581 |
g |
32071581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32078311 - 32078077
Alignment:
| Q |
1 |
ttgccaaacaaatttacctttg--gcatcaattaaaaccatgttaccatttgagagtaacctaaaggcaacaacacctttattggaagtgtttgtttgcc |
98 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
32078311 |
ttgccaaacaaatttacctttatagtatcaattaaaaccatgttactatttgagagtaacctaaaggcaataacacctt-attggaagtgtttgtttgcc |
32078213 |
T |
|
| Q |
99 |
aaacaattcttccatcagcattagccaacacaagatttccatcagcacctaatgaaaaagtaccattttcaccaactgggttgcctctatttgcttccca |
198 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
32078212 |
aaataattcttccatcagcattagccaacacaagattttcatcaacttctaatgaaaaagttgcattttcatcaactgggctgcctctatttgcttccca |
32078113 |
T |
|
| Q |
199 |
tacccaccggaaaagctgctccgatcgttgatgtcc |
234 |
Q |
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||||||| |||||||||||||||||||||| |||| |
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| T |
32078112 |
cacccaccagaaaagctgctccgatcgttgaagtcc |
32078077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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