View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_180 (Length: 249)
Name: NF9388A_low_180
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_180 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 8338216 - 8337987
Alignment:
| Q |
19 |
gttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaatt |
118 |
Q |
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| T |
8338216 |
gttatgtattttcatgtttaggatggttgagaatgaggtgtt-gtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaatt |
8338118 |
T |
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| Q |
119 |
gagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagataagacaatgtacacattgtctcagtt |
218 |
Q |
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| T |
8338117 |
gagaaaagtttaaatggatgattgtgatgttgttgttgaaatagacataaaaattgttaaggttgtcaagagaaaagacaatgtacacattgtctcagtt |
8338018 |
T |
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| Q |
219 |
gtactgataacaatgtggtttgttactttga |
249 |
Q |
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| T |
8338017 |
gtactaataacaatgtggtttgttactttga |
8337987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 21482322 - 21482146
Alignment:
| Q |
23 |
tgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgaga |
122 |
Q |
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| T |
21482322 |
tgtattttcatgttgaggatggttgagaatgagatatt-gtttggagtgtaaatgatatcagagatagaggaattcaaagattgagaaaagcaattgaga |
21482224 |
T |
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| Q |
123 |
aaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagataagacaat |
200 |
Q |
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| T |
21482223 |
aaattttgaaagggtgattgtgatgttgttgttgaaatagacatgacaattgttaaagttatgaagagaaaagacaat |
21482146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 36100240 - 36100158
Alignment:
| Q |
109 |
aaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagaga |
191 |
Q |
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| T |
36100240 |
aaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtcaagaga |
36100158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 36090839 - 36090925
Alignment:
| Q |
105 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagaga |
191 |
Q |
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| T |
36090839 |
tgagaaaaacaagtgagaaaattttaaatgggagattgtgatgttgttgtagaaacagacaagacaactgttatagttgtcaagaga |
36090925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 34972148 - 34972199
Alignment:
| Q |
105 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttg |
156 |
Q |
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| T |
34972148 |
tgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 36100332 - 36100290
Alignment:
| Q |
19 |
gttatgtattttcatgtttaggatgtttgagaatgaggtgttt |
61 |
Q |
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| T |
36100332 |
gttatgtattttcatatttaggatggttgagaatgaggggttt |
36100290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 36107587 - 36107515
Alignment:
| Q |
23 |
tgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaat |
96 |
Q |
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| T |
36107587 |
tgtattttcatgttgaggatagttgagaatgagg-cattgtttggtgtgtaagtaacttcagagacaagggaat |
36107515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 34972081 - 34972120
Alignment:
| Q |
46 |
tgagaatgaggtgtttgtttggtgtgtaaatgacttcagag |
86 |
Q |
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| T |
34972081 |
tgagaatgaggtatt-gtttggtgtgtaaatgacttcagag |
34972120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 6838348 - 6838198
Alignment:
| Q |
23 |
tgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgaga |
122 |
Q |
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| T |
6838348 |
tgtatttttatgttgaggatagttgagaatgaggtgtt-gtttggtgtgtaagtaacttcagagacaagggaa---------tgtgaaagacaatttata |
6838259 |
T |
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| Q |
123 |
aaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttg |
183 |
Q |
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| T |
6838258 |
aaatgttgaataggtgattttgctgttgttgttgaattagacaagacaattgttaaggttg |
6838198 |
T |
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