View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_184 (Length: 248)

Name: NF9388A_low_184
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_184
NF9388A_low_184
[»] chr6 (13 HSPs)
chr6 (1-240)||(33303712-33303951)
chr6 (1-149)||(33261922-33262072)
chr6 (13-194)||(33409248-33409427)
chr6 (1-153)||(33358226-33358386)
chr6 (16-194)||(33398336-33398512)
chr6 (1-170)||(33387462-33387627)
chr6 (53-136)||(31563400-31563483)
chr6 (13-80)||(33407756-33407823)
chr6 (1-126)||(9166095-9166216)
chr6 (1-92)||(28870716-28870806)
chr6 (13-80)||(33396806-33396873)
chr6 (55-99)||(33056935-33056979)
chr6 (1-92)||(33281096-33281187)
[»] scaffold0428 (2 HSPs)
scaffold0428 (7-153)||(5691-5839)
scaffold0428 (1-92)||(13065-13156)
[»] chr2 (2 HSPs)
chr2 (1-97)||(17441442-17441538)
chr2 (1-80)||(17446969-17447048)
[»] scaffold1408 (1 HSPs)
scaffold1408 (7-98)||(2-93)
[»] chr4 (1 HSPs)
chr4 (7-93)||(31499608-31499694)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33303951 - 33303712
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33303951 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttcttggctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccgg 33303852  T
Q  101 aacaagaacaagaatcattcatctcaagagtcataaacttcacagagaagaaacaacagatagatcacaagaaggtgatgaagagtctcaacctgcaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33303851 aacaagaacaagaatcattcatctcaagagtcataaacttcacagagaagaaacaacagatggatcacaagaaggtgatgaagagtctcaacctgcaaaa 33303752  T
Q  201 tacaatctgcaatgaagagcattgacatgatgttcatctc 240  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  33303751 tacaatctgcaatgaagagcattgacattatgttcatctc 33303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 33262072 - 33261922
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccgg 100  Q
    ||||| ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| || |||| |||||||||||||||||||||||||||| ||||      
T  33262072 gacctacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaagattttggcaattgaagatgagacacaaccacaaccac 33261973  T
Q  101 aacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaa 149  Q
    ||  ||||||||||||||||| ||||  ||||||||  |||||||||||||    
T  33261972 aatcagaacaagaatcattcacctcacaagtcataactacttcacagagaa 33261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 33409427 - 33409248
Alignment:
Q  13 ttcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaag 112  Q
    |||||||| |||||||||||||| ||||||| ||| |||  |||||| |||| | ||||||||||||  |||||||||||| ||||      ||||||||    
T  33409427 ttcaacttcacaatgatgaatcatgaaaattccttggctcagaagtgtaagattatggcaattgaaggcgagacacaaccacaacc------agaacaag 33409334  T
Q  113 aatcattcatctcaagagtcataa--acttc--acagagaagaaacaacagatagatcacaagaaggtgatgaagagtctcaacct 194  Q
    ||||||||||||||  ||||||||  |||||  | | |||||||||||||||| |||||||||||||| | ||||||| |||||||    
T  33409333 aatcattcatctcacaagtcataactacttcgaagaaagaagaaacaacagatggatcacaagaaggtcaagaagagtttcaacct 33409248  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 33358386 - 33358226
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgaga------cacaaccag 94  Q
    ||||| ||||| |||||||| |||||||||||||| |||||| ||||  ||||||| ||||||| |||||||||||||||| |||      | |||||      
T  33358386 gacctacaagagttcaacttcacaatgatgaatcacgaaaatctcttaactgggaaatgcaagattttggcaattgaagattagacgcaaccgcaaccgc 33358287  T
Q  95 aaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa 153  Q
    ||||| ||| ||||||||||||||||||||||  ||||||||  |||||||||||||||||    
T  33358286 aaccgcaactagaacaagaatcattcatctcacaagtcataattacttcacagagaagaaa 33358226  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 33398512 - 33398336
Alignment:
Q  16 aacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaat 115  Q
    ||||| |||||||||||||| ||||||| |||||||   ||||| |||| | ||||||||||||  |||||||||||| ||||      |||||||||||    
T  33398512 aacttcacaatgatgaatcatgaaaattcctttgctcaaaagtgtaagattatggcaattgaaggcgagacacaaccacaacc------agaacaagaat 33398419  T
Q  116 cattcatctcaagagtcataa--acttcacaga--gaagaaacaacagatagatcacaagaaggtgatgaagagtctcaacct 194  Q
    |||||||||||  ||||||||  |||||  |||  ||||||||||||||| |||||||||||||| | ||||||| |||||||    
T  33398418 cattcatctcacaagtcataactacttcgaagaaggaagaaacaacagatggatcacaagaaggtcacgaagagtttcaacct 33398336  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 33387627 - 33387462
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccgg 100  Q
    ||||| ||||||||||||||| ||||||| ||||| ||||||| ||| |||  |||||| |||| ||||||||||||||||| |||||||| | ||||      
T  33387627 gacctacaagaattcaacttaccaatgataaatcacgaaaattccttggctccgaagtgtaagattttggcaattgaagatgggacacaactacaacc-- 33387530  T
Q  101 aacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaacaacagatagatcacaa 170  Q
        | |||||||||||||||| |||  ||||||||  | | ||| ||||||||||||||||| ||||||||    
T  33387529 ----acaacaagaatcattcatgtcacaagtcataactagtacaccgagaagaaacaacagatggatcacaa 33387462  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 31563400 - 31563483
Alignment:
Q  53 ggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa 136  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| | ||  ||||||| |||| |||||||||  ||||||||    
T  31563400 ggaagtgaaagaatttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataa 31563483  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 33407823 - 33407756
Alignment:
Q  13 ttcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 80  Q
    ||||||||||||||||||||||| ||||||| ||| |||  ||||||||||| ||||| |||||||||    
T  33407823 ttcaacttaacaatgatgaatcacgaaaattccttggctcagaagtgcaagattttggaaattgaaga 33407756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 9166216 - 9166095
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccgg 100  Q
    ||||| ||||| |||||||||||   ||||||||| ||||| |  || ||| ||| |||||||| |||||||||| | ||||||| ||| ||| |||||     
T  9166216 gacctacaagagttcaacttaac---gatgaatcacgaaaaatcattggctcggacgtgcaagactttggcaatttaggatgagagacagccacaaccg- 9166121  T
Q  101 aacaagaacaagaatcattcatctca 126  Q
    ||| |||||||||||||||| |||||    
T  9166120 aaccagaacaagaatcattcgtctca 9166095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28870716 - 28870806
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaacc 92  Q
    ||||| ||||| |||||||||||||||||||| ||  |||||| ||| |||  ||||| ||||| ||||| ||||||||||| |||||||||    
T  28870716 gacctacaagagttcaacttaacaatgatgaa-cacaaaaattccttggctcagaagttcaagattttggaaattgaagatgggacacaacc 28870806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 33396873 - 33396806
Alignment:
Q  13 ttcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 80  Q
    ||||||||||||||||||||||| ||||||| ||| | |  ||||||||||| ||||| |||||||||    
T  33396873 ttcaacttaacaatgatgaatcatgaaaattccttggttcagaagtgcaagattttggaaattgaaga 33396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 33056979 - 33056935
Alignment:
Q  55 aagtgcaagaatttggcaattgaagatgagacacaaccagaaccg 99  Q
    |||||||| | |||| |||||||||||||||||||||||||||||    
T  33056979 aagtgcaaaattttgacaattgaagatgagacacaaccagaaccg 33056935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 33281187 - 33281096
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaacc 92  Q
    ||||| ||||| ||||  |||||||| |||||||| |||  || ||| |||  ||||||||||| ||||| ||||||||||| |||||||||    
T  33281187 gacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgcaagattttggaaattgaagatgggacacaacc 33281096  T

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Target: scaffold0428 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 5839 - 5691
Alignment:
Q  7 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaag 106  Q
    ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| || |||| |||||||||||||||||||||||||||| ||||  ||  ||    
T  5839 caagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaagattttggcaattgaagatgagacacaaccacaaccacaatcag 5740  T
Q  107 aacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa 153  Q
    ||||||||||||||| ||||  ||||||||  |||||||||||||||||    
T  5739 aacaagaatcattcacctcacaagtcataactacttcacagagaagaaa 5691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13065 - 13156
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaacc 92  Q
    ||||| ||||| ||||  |||||||| |||||||| |||  || ||| |||  ||||||||||| ||||| ||||||||||| |||||||||    
T  13065 gacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgcaagattttggaaattgaagatgggacacaacc 13156  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 17441442 - 17441538
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaac 97  Q
    ||||| ||||| ||||||||||||||||||||||| |||||   ||| |||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  17441442 gacctacaagagttcaacttaacaatgatgaatcacgaaaaaaccttggctcagaagtgcaagattttggcaattgaagatgagacacaaccagaac 17441538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17446969 - 17447048
Alignment:
Q  1 gacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 80  Q
    ||||| ||||| ||||||||||||||| ||||| | ||||||| ||| |||  ||||||||||| ||| | |||||||||    
T  17446969 gacctacaagagttcaacttaacaatgttgaataacgaaaattccttggctcagaagtgcaagatttttgaaattgaaga 17447048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 93 - 2
Alignment:
Q  7 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaacc 98  Q
    ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| || |||| |||||||||||||||||||||||||||| ||||    
T  93 caagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaagattttggcaattgaagatgagacacaaccacaacc 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 31499608 - 31499694
Alignment:
Q  7 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaacca 93  Q
    ||||| || ||||||||||||||||||||   ||||  ||| ||||| ||| |||||  ||||||||||||||||||| ||||||||    
T  31499608 caagagttgaacttaacaatgatgaatcacagaaataccttagctggaaagcgcaagtctttggcaattgaagatgaggcacaacca 31499694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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