View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_194 (Length: 247)
Name: NF9388A_low_194
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_194 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 45522717 - 45522506
Alignment:
| Q |
14 |
aatattttctaaattttgatttcttaaagagtgtttcgggagcacccttaaaataaaaacaattgttcttgtgttgcagtaacgtattattagttcaaag |
113 |
Q |
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| T |
45522717 |
aatattttttaaattttgatttcttaaagagtgtttcggaagcacccttaaaataaaaacaattgttcttgtgttgcagtaacatattattagttcaaag |
45522618 |
T |
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| Q |
114 |
acatatttatttaagcaaacaaatattccgtttaagaaaatctaaattgtatctcacaaactaaactagtactaaaaaataatcatacggttatattagt |
213 |
Q |
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| T |
45522617 |
acatatttaattaagcaaacaaatattccgtttaagaaaatctaaattgtatctcacaaactaaactagtactaaaaaataatcatacggttatattagt |
45522518 |
T |
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| Q |
214 |
ttcatatactac |
225 |
Q |
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|||||||||||| |
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| T |
45522517 |
ttcatatactac |
45522506 |
T |
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