View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_195 (Length: 247)
Name: NF9388A_low_195
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_195 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 50222720 - 50222889
Alignment:
| Q |
65 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
|
| Q |
165 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
50222889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50222576 - 50222640
Alignment:
| Q |
1 |
agaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50222576 |
agaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University