View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_2 (Length: 604)
Name: NF9388A_low_2
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 288 - 525
Target Start/End: Complemental strand, 2693574 - 2693345
Alignment:
| Q |
288 |
tacccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgtacttcttcagcctgacctgcataaaaattaat |
387 |
Q |
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| T |
2693574 |
tacccaaaaagcaggcaaagcacataacatattcaaaggccccccatcagcacctctcatttccatgtacttctttagcctgacctgcataaaaattaat |
2693475 |
T |
|
| Q |
388 |
acatgtcctacttaacttagtcttagtgtactgaaattatatagttaaaaatgtaacaccgagactttcggcatttcagattggatgtgtcaatgtgtgt |
487 |
Q |
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| T |
2693474 |
acatgtcctacttaacttagtcttagtgtactgaaattatatggttagaaatgtaacactgagactttcggtatttcagattggat--------gtgtgc |
2693383 |
T |
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| Q |
488 |
caagtgtctgacacatattggtgtcgacattgaacatt |
525 |
Q |
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| T |
2693382 |
aaagtgtccgacacatattggtgttgacattgaacatt |
2693345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 2693827 - 2693573
Alignment:
| Q |
15 |
attacctgatttctcaaatactgtctgacatcatcggtccaatcggcaatcatatctagaacattatgcagtgaaacctcatcatatagtagacctacct |
114 |
Q |
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| T |
2693827 |
attacctgattcctcaaatattgtttgtcttcatcggtccagtccgcaatcatatctagaacattatgtagtgaaacctcatcatatagtagacctacct |
2693728 |
T |
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| Q |
115 |
gacataggaaagattacca------------gttaaactctgatcacatgccttgttcaccaaggcaattaagtttcacaacctttgatccttaa-ctca |
201 |
Q |
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| T |
2693727 |
gacataggaaaaattatcacaataaactaaggttaaactcacacaacatgccttgttcaacaaggcaattaagtttcacaacctttgatccttaatctc- |
2693629 |
T |
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| Q |
202 |
agttatatgcactataattctaaagacaaattaaacccaattttacaatgtatata |
257 |
Q |
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| T |
2693628 |
agttatatgcattataattctatagacaaattaaagttaattttacaatatatata |
2693573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 2686688 - 2686566
Alignment:
| Q |
15 |
attacctgatttctcaaatactgtctgacatcatcggtccaatcggcaatcatatctagaacattatgcagtgaaacctcatcatatagtagacctacct |
114 |
Q |
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|||||||||||||| ||||| |||||| | || ||||||||| ||||||||||| || |||||||| | ||||||||||||||||||||||||||||| |
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| T |
2686688 |
attacctgatttcttaaatattgtctgtcttcggtggtccaatcagcaatcatatccaggacattatgtaatgaaacctcatcatatagtagacctacct |
2686589 |
T |
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| Q |
115 |
g----acataggaaagattacca |
133 |
Q |
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| T |
2686588 |
ggaatatataggaaagattacca |
2686566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 2685689 - 2685614
Alignment:
| Q |
281 |
gatgaattacccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgta |
356 |
Q |
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| T |
2685689 |
gatgaattacccaaaaagctggtggagcacatagcatgctctgagggaccacatcagcacctctcatttccatgta |
2685614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 40924315 - 40924400
Alignment:
| Q |
289 |
acccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgtacttcttcagcctgacctg |
374 |
Q |
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| T |
40924315 |
acccaaaatgctggtaaagcacataaccttctccaaggccctccatcagcacctctcatctccaaatacctctttagcctaacctg |
40924400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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