View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_21 (Length: 441)

Name: NF9388A_low_21
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_21
NF9388A_low_21
[»] chr5 (1 HSPs)
chr5 (217-282)||(8837501-8837565)
[»] chr4 (6 HSPs)
chr4 (73-272)||(45088717-45088913)
chr4 (223-269)||(44642825-44642871)
chr4 (4-54)||(44668633-44668683)
chr4 (4-54)||(44687909-44687959)
chr4 (397-430)||(45094985-45095018)
chr4 (4-33)||(45095432-45095461)
[»] chr8 (3 HSPs)
chr8 (215-258)||(42694632-42694675)
chr8 (389-435)||(42694841-42694887)
chr8 (215-256)||(42700277-42700318)
[»] chr1 (7 HSPs)
chr1 (4-37)||(43986172-43986205)
chr1 (4-35)||(43983365-43983396)
chr1 (4-51)||(44004750-44004797)
chr1 (4-42)||(19567332-19567370)
chr1 (283-332)||(43908814-43908863)
chr1 (283-323)||(43902482-43902522)
chr1 (218-282)||(43908726-43908789)
[»] chr7 (2 HSPs)
chr7 (388-436)||(9798398-9798446)
chr7 (4-37)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (5-50)||(24002368-24002413)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 8837565 - 8837501
Alignment:
Q  217 taccatgagagtctggtatcgccgcaatggtaaaccatatcttgtattgttatttttcagtaacat 282  Q
    ||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  8837565 taccatgagagtctgctatcgccgcaatgctaaatcatat-ttgtattgttatttttcagtaacat 8837501  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 45088913 - 45088717
Alignment:
Q  73 gatgccttgttcatttcagaaaacggtgtccttctgctgagaaacaagaataattccgaacttattgtgtataatttgaatgatgatggtggactggact 172  Q
    ||||||||||||||||| ||||||||||| ||||||||||||  ||||  |   ||| ||||| |||||||||| || ||  || ||||| |  || | |    
T  45088913 gatgccttgttcatttctgaaaacggtgttcttctgctgagacccaagctt---tccaaacttgttgtgtataacttaaaaaataatggtagtttgcatt 45088817  T
Q  173 attgcagtaagatttttggcgcatttgggcgtgatccacttgtttaccatgagagtctggtatcgccgcaatggtaaaccatatcttgtattgttatttt 272  Q
    || | |||| || |||||||  ||||| |  ||||| || | |||| || |||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  45088816 atcgtagtacgaattttggcaaatttgcgtttgatctacatatttatcacgagagtctggtatcaccgcaatggtaaatcatatattgtattgttatttt 45088717  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 44642871 - 44642825
Alignment:
Q  223 gagagtctggtatcgccgcaatggtaaaccatatcttgtattgttat 269  Q
    |||||||||||||| ||||||||||||| ||||| || |||||||||    
T  44642871 gagagtctggtatcaccgcaatggtaaatcatatattctattgttat 44642825  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 44668683 - 44668633
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 54  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44668683 gagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44668633  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 44687959 - 44687909
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 54  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44687959 gagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44687909  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 45095018 - 45094985
Alignment:
Q  397 tttgcatttacacttgcaagagtaatttgtctgt 430  Q
    ||||||| ||||||||||||||||||||||||||    
T  45095018 tttgcatctacacttgcaagagtaatttgtctgt 45094985  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 45095461 - 45095432
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaa 33  Q
    ||||||||||||||||||||||||||||||    
T  45095461 gagtatggagttgttgagtcatggactaaa 45095432  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 42694632 - 42694675
Alignment:
Q  215 tttaccatgagagtctggtatcgccgcaatggtaaaccatatct 258  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  42694632 tttaccatgagagtctggtatcaccgcaatggtaaatcatatct 42694675  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 42694841 - 42694887
Alignment:
Q  389 actcactatttgcatttacacttgcaagagtaatttgtctgtctatg 435  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||||    
T  42694841 actcacaattttcatctacacttgcaagagttatttgtctgtctatg 42694887  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 42700277 - 42700318
Alignment:
Q  215 tttaccatgagagtctggtatcgccgcaatggtaaaccatat 256  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  42700277 tttagcatgagagtctgctatcgccgcaatggtaaatcatat 42700318  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 43986205 - 43986172
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattga 37  Q
    ||||||||||||||||||||||||||||||||||    
T  43986205 gagtatggagttgttgagtcatggactaaattga 43986172  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 43983396 - 43983365
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaatt 35  Q
    ||||||||||||||||||||||||||||||||    
T  43983396 gagtatggagttgttgagtcatggactaaatt 43983365  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 44004797 - 44004750
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatcttccctcag 51  Q
    ||||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  44004797 gagtatggagttgctgagtcatggactaaattgatgatcatccctcag 44004750  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 19567370 - 19567332
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatc 42  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  19567370 gagtatggagttgctgagtcatggactatattgacaatc 19567332  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 43908814 - 43908863
Alignment:
Q  283 attcaattaatgtttgttgtcatcttctttttattccattttattcagaa 332  Q
    |||||||||||||||||||| ||||| ||||||||  |||||||| ||||    
T  43908814 attcaattaatgtttgttgtgatcttatttttattttattttatttagaa 43908863  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 43902482 - 43902522
Alignment:
Q  283 attcaattaatgtttgttgtcatcttctttttattccattt 323  Q
    |||||||||||||||||||| ||||| ||||||||| ||||    
T  43902482 attcaattaatgtttgttgtgatcttgtttttattctattt 43902522  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 43908726 - 43908789
Alignment:
Q  218 accatgagagtctggtatcgccgcaatggtaaaccatatcttgtattgttatttttcagtaacat 282  Q
    ||||||||||||| ||||| | ||| ||||||| |||||||| ||||||| ||||||| ||||||    
T  43908726 accatgagagtctagtatcacagcagtggtaaatcatatcttatattgtt-tttttcactaacat 43908789  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 9798446 - 9798398
Alignment:
Q  388 cactcactatttgcatttacacttgcaagagtaatttgtctgtctatgt 436  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  9798446 cactcactattttcatctacacttgcaagattaatttgtctgtccatgt 9798398  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 41688826 - 41688793
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattga 37  Q
    |||||| |||||||||||||||||||||||||||    
T  41688826 gagtatagagttgttgagtcatggactaaattga 41688793  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 24002368 - 24002413
Alignment:
Q  5 agtatggagttgttgagtcatggactaaattgacaatcttccctca 50  Q
    |||| |||||||||||||||||||| ||||||| |||| |||||||    
T  24002368 agtacggagttgttgagtcatggacaaaattgaaaatcatccctca 24002413  T

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