View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_211 (Length: 243)
Name: NF9388A_low_211
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_211 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 32064799 - 32064576
Alignment:
| Q |
20 |
taaggtactattattcactggcctaccaatgatactattgccagaagtggtagaattggtaacagaaaaatcaaatccaaactcaaaagattctggatca |
119 |
Q |
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| T |
32064799 |
taaggtactattattcactggcctaccaatgatactattgccagaagtggtagaattggtaacatgaaaatcaaatccaaactcaaaagattctggatca |
32064700 |
T |
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| Q |
120 |
gattttagtgtgacattttctaatgagcctttttcaaatgaaaaccaagaagatgaaaaccaatatttacttggcctaggagaatttttactcttataat |
219 |
Q |
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| T |
32064699 |
gatttaagtgtgacattttctaatgagcctttttcaaatgaaaaccaagaagaagaaaaccaatatttacttggcctaggagaatttgtactcctataat |
32064600 |
T |
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| Q |
220 |
ataaacccaaacctttaggctcca |
243 |
Q |
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||||| ||||||||||||| |||| |
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| T |
32064599 |
ataaagccaaacctttaggttcca |
32064576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 32031664 - 32031441
Alignment:
| Q |
20 |
taaggtactattattcactggcctaccaatgatactattgccagaagtggtagaattggtaacagaaaaatcaaatccaaactcaaaagattctggatca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
32031664 |
taaggtactattattcactggcctaccaatgatactactaccagaagtggtagaattggcaacaaaaaaatcaaatccatactcaaaagattctggatca |
32031565 |
T |
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| Q |
120 |
gattttagtgtgacattttctaatgagcctttttcaaatgaaaaccaagaagatgaaaaccaatatttacttggcctaggagaatttttactcttataat |
219 |
Q |
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| T |
32031564 |
gattttagtgtgacattttctaatgaacctttttcaaatgaaaaccaagaagatgaaaaccaatatttaattggcctaggagaatttgtactcttataat |
32031465 |
T |
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| Q |
220 |
ataaacccaaacctttaggctcca |
243 |
Q |
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| T |
32031464 |
ataaagccaaacctttaggctcca |
32031441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 32072127 - 32071908
Alignment:
| Q |
24 |
gtactattattcactggcctaccaatgatactattgccagaagtggtagaattggtaacagaaaaatcaaatccaaactcaaaagattctggatcagatt |
123 |
Q |
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|||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32072127 |
gtactattcttcactggcctaccaatgatactactaccagaagtggtagaattggcaacaaaaaaatcaaatccaaactcaaaagattctggatcagatt |
32072028 |
T |
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| Q |
124 |
ttagtgtgacattttctaatgagcctttttcaaatgaaaaccaagaagatgaaaaccaatatttacttggcctaggagaatttttactcttataatataa |
223 |
Q |
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| T |
32072027 |
taagtgtgacattttctaatgagcctttttcaaatgaaaaccaagaagatgaaaaccaatatttaattggcataggtgaaatttcactcttataatacaa |
32071928 |
T |
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| Q |
224 |
acccaaacctttaggctcca |
243 |
Q |
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| T |
32071927 |
agccaaacctttaggctcca |
32071908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 32078524 - 32078438
Alignment:
| Q |
152 |
ttcaaatgaaaaccaagaagatgaaaaccaatatttacttggcctaggagaatttttactcttataatataaacccaaacctttagg |
238 |
Q |
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|||||||||| ||||| ||||||| |||||| | |||||||||| |||||||||||||| ||||||||| ||| |||||||| |
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| T |
32078524 |
ttcaaatgaataccaattagatgaattccaatagggaattggcctaggtgaatttttactcttgtaatataaagtcaaccctttagg |
32078438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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