View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_219 (Length: 242)
Name: NF9388A_low_219
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_219 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 31492207 - 31492316
Alignment:
| Q |
118 |
caatacatataccttattacaatatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctctttaa |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31492207 |
caatacatataccttattacaacatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctctttga |
31492306 |
T |
|
| Q |
218 |
tatattgttc |
227 |
Q |
| |
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||| |||||| |
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| T |
31492307 |
tattttgttc |
31492316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 31497596 - 31497705
Alignment:
| Q |
118 |
caatacatataccttattacaatatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctctttaa |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31497596 |
caatacatataccttattacaacatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctctttga |
31497695 |
T |
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| Q |
218 |
tatattgttc |
227 |
Q |
| |
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||| |||||| |
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| T |
31497696 |
tattttgttc |
31497705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 31502982 - 31503091
Alignment:
| Q |
118 |
caatacatataccttattacaatatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctctttaa |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31502982 |
caatacatataccttattacaacatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctctttga |
31503081 |
T |
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| Q |
218 |
tatattgttc |
227 |
Q |
| |
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||| |||||| |
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| T |
31503082 |
tattttgttc |
31503091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 31487602 - 31487649
Alignment:
| Q |
17 |
atcaaaacctaattgagtagtgaagtaccacgaagatgggaagagtgg |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31487602 |
atcaaaacctaattgagtagtgaagtaccacgaagatgggaagagtgg |
31487649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 31492107 - 31492183
Alignment:
| Q |
17 |
atcaaaacctaattgagtagtgaagtaccacgaagatgggaagagtggnnnnnnntctcacgtgcaattccataata |
93 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
31492107 |
atcaaaacctaattgagcagtgaagtaccacgaagatgggaagagtggaaaaaaatctcacgcgcaattccataata |
31492183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 31497496 - 31497572
Alignment:
| Q |
17 |
atcaaaacctaattgagtagtgaagtaccacgaagatgggaagagtggnnnnnnntctcacgtgcaattccataata |
93 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
31497496 |
atcaaaacctaattgagcagtgaagtaccacgaagatgggaagagtggaaaaaaatctcacgcgcaattccataata |
31497572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 31502882 - 31502958
Alignment:
| Q |
17 |
atcaaaacctaattgagtagtgaagtaccacgaagatgggaagagtggnnnnnnntctcacgtgcaattccataata |
93 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
31502882 |
atcaaaacctaattgagcagtgaagtaccacgaagatgggaagagtggaaaaaaatctcacgcgcaattccataata |
31502958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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