View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_22 (Length: 438)
Name: NF9388A_low_22
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_22 |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 11622108 - 11622538
Alignment:
| Q |
11 |
tgagatgaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcaga |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
11622108 |
tgagaagaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcagaaaaccattagggctgagttcgcaga |
11622207 |
T |
|
| Q |
111 |
ttgtacagtaatcactgtcgcacacagaataccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtttcttttcgagttttactat |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11622208 |
ttgtacagtaatcactgtcgcacacagaataccaactgtgatggattgcaatatggttcttgctataagtgatggtaagtttcttttcgagttttactat |
11622307 |
T |
|
| Q |
211 |
cc--------ctccatctcatgtaacaaaaacatacagactaatcaatagctttaaagccattttctttaacgatagtaatccgttgctaatacacggac |
302 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
11622308 |
ccctcaatccctccatctcatgtaacaaaaacatacagactaatcaatagctttatagccattttctttaacgataataatccattgctaatacacggac |
11622407 |
T |
|
| Q |
303 |
aatgtaagactacaaacaatagagtttatcggacaacgaaacctacttatagattttttatttaagattttgaccttgtatagcacataagcgataacac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11622408 |
aatgtaagactacaaacaatagagtttatcggacaacgaaacctacttatagattttttatttaagattttgaccttgtatagcacataagcgataacac |
11622507 |
T |
|
| Q |
403 |
gtaaaatatggagcacttaatgtgatcattt |
433 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
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|
| T |
11622508 |
gtacaatatggagcacttaatgtgatcattt |
11622538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 11670315 - 11670141
Alignment:
| Q |
17 |
gaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtac |
116 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||| || ||||||||||| |
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|
| T |
11670315 |
gaagtaggatattggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtac |
11670216 |
T |
|
| Q |
117 |
agtaatcactgtcgcacacagaataccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtt |
191 |
Q |
| |
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|| ||||| || |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
11670215 |
ggtgatcacagtagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatggtgagtt |
11670141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 11628390 - 11628225
Alignment:
| Q |
28 |
ttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactg |
127 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||| ||| | || ||||||||||||||||| || |||||||||||||| ||||| | |
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|
| T |
11628390 |
ttggtgttggatgaagcaactgcttcgattgataattctactgatcttattctccagaaaaccattagggctgagtttgcagattgtacagtgatcacag |
11628291 |
T |
|
| Q |
128 |
tcgcacacagaataccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtttc |
193 |
Q |
| |
|
| ||||| || |||||||||||| ||||||||| |||||||||||| |||||||||||| |||||| |
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|
| T |
11628290 |
tggcacataggataccaactgtgatggattgcagtatggttcttgccataagtgatggtgagtttc |
11628225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 11667036 - 11667201
Alignment:
| Q |
40 |
gaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactgtcgcacacagaa |
139 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||| |||| ||||| ||||| |||| || ||||||||||| || ||||| || || ||||| | |
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| T |
11667036 |
gaagcaactgcatcgattgataactcaactgatctgattctgcagaaaactattagaactgagtttgcagattgtacggtgatcacagtagctcacagga |
11667135 |
T |
|
| Q |
140 |
taccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtttcttttcgagtttt |
205 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||| | || |||||||||||||| ||||| ||||||| |
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|
| T |
11667136 |
tacaaactgtgatggactgcaatatggttctttcaatcagtgatggtaagttgctttttgagtttt |
11667201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 11735699 - 11735544
Alignment:
| Q |
17 |
gaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtac |
116 |
Q |
| |
|
|||||| ||| || || ||||| ||||||||||| |||||||||||||| || ||| ||||| | |||||||||||||| || || ||||||||||| |
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| T |
11735699 |
gaagtaggatattagtgttggatgaagcaactgcatcaattgataattcaacggatatgattctacaaaaaaccattagaaaggagtttgcagattgtac |
11735600 |
T |
|
| Q |
117 |
agtaatcactgtcgcacacagaataccaactgtgctggattgcaatatggttcttg |
172 |
Q |
| |
|
|| ||||| || |||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
11735599 |
tgtgatcacggtagcacacaggataccaactgtgatggattgcaatatggttcttg |
11735544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 11706491 - 11706334
Alignment:
| Q |
40 |
gaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactgtcgcacacagaa |
139 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||| |||| ||||||||||| |||| || ||||||| ||| || ||||| || || ||||| | |
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|
| T |
11706491 |
gaagcaactgcatcgattgataactcaactgatctgattctgcagaaaaccattagaactgagtttgcagattctacggtgatcacagtagctcacagga |
11706392 |
T |
|
| Q |
140 |
taccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtttctttt |
197 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||| | || ||||||||||||||| |||| |
|
|
| T |
11706391 |
taccgactgtgatggattgcactatggttctttcaatcagtgatggtaagtttttttt |
11706334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 11759815 - 11759974
Alignment:
| Q |
28 |
ttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactg |
127 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| |||||| | |||||| | ||| | ||||| |||||||| || || |||||||||||||| ||||| | |
|
|
| T |
11759815 |
ttggtgttggatgaagcaactgcatcaatcgataatgcgactgatttaattcttcaaaataccattagaaaagagtttgcagattgtacagtgatcacag |
11759914 |
T |
|
| Q |
128 |
tcgcacacagaataccaactgtgctggattgcaatatggttcttgctataagtgatggta |
187 |
Q |
| |
|
| |||||||| |||||||||||| |||||||||||||||||||| | |||||||| |||| |
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|
| T |
11759915 |
tagcacacaggataccaactgtgatggattgcaatatggttctttccataagtgacggta |
11759974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 12089596 - 12089449
Alignment:
| Q |
40 |
gaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactgtcgcacacagaa |
139 |
Q |
| |
|
||||||||||| |||||||||||| | || ||| | ||| | ||||| |||||||| || || |||||||||||||| || || || || ||||| | |
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|
| T |
12089596 |
gaagcaactgcatcaattgataatgcgaccgatttaattcttcaaaataccattagaaaagagtttgcagattgtacagtgataacagtagcgcacagga |
12089497 |
T |
|
| Q |
140 |
taccaactgtgctggattgcaatatggttcttgctataagtgatggta |
187 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
12089496 |
taccaactgtgatggattgcaatatggttctttccataagtgatggta |
12089449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 16515 - 16712
Alignment:
| Q |
17 |
gaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtac |
116 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||| |||||||| ||| || ||||||||||| |
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|
| T |
16515 |
gaagtaggatattggtgttggacgaagcaactgcttcaattgataattctactgatcttattctacaaaaaaacattagggttgagtttgcagattgtac |
16614 |
T |
|
| Q |
117 |
agtaatcactgtcgcacacagaataccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtttcttttcgagttttactatccct |
214 |
Q |
| |
|
||| ||||| || |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16615 |
agtgatcacagtagcacacaggataccaacggtgatggattgcaatatggttcttgctataagtgatggtaagtttcttttcgagttttactatccct |
16712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 4977 - 4797
Alignment:
| Q |
17 |
gaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtac |
116 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||||||||| || ||||||||||| |
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|
| T |
4977 |
gaagtaggatattggtgttggatgaagcaactgcatcagttgataattctacagatctgattctgcaaaaaatcattagggctgagtttgcagattgtac |
4878 |
T |
|
| Q |
117 |
agtaatcactgtcgcacacagaataccaactgtgctggattgcaatatggttcttgctataagtgatggtaagtttctttt |
197 |
Q |
| |
|
||| ||||| || |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
4877 |
agtgatcacagtagcacacaggataccaactgtgatggattgcaatatggttctttctataagtgatggtacgtttatttt |
4797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 44815545 - 44815695
Alignment:
| Q |
40 |
gaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactgtcgcacacagaa |
139 |
Q |
| |
|
||||||||||| |||||||||||| | ||||| ||||| | || |||||||||||| ||||||| || |||||||| |||||||| || || || || | |
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|
| T |
44815545 |
gaagcaactgcatcaattgataatgcaactgacttgattttacagaaaaccattaggactgaatttgccgattgtacggtaatcacagtagctcatagga |
44815644 |
T |
|
| Q |
140 |
taccaactgtgctggattgcaatatggttcttgctataagtgatggtaagt |
190 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| | || ||||||||||||| |
|
|
| T |
44815645 |
taccaactgtgatggattgcaccaaggttctttcaatcagtgatggtaagt |
44815695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 16389755 - 16389605
Alignment:
| Q |
40 |
gaagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaaccattagggctgaattcgcagattgtacagtaatcactgtcgcacacagaa |
139 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||| ||| ||| ||||||||||| | || || |||||||||||||||||||| || || ||||||| |
|
|
| T |
16389755 |
gaagcaactgcatcagtcgataattcaactgattatattctgctgaaaaccattagaaccgagtttgcagattgtacagtaatcacagtagcgcacagaa |
16389656 |
T |
|
| Q |
140 |
taccaactgtgctggattgcaatatggttcttgctataagtgatggtaagt |
190 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||| | || | ||||||||||| |
|
|
| T |
16389655 |
ttccaactgtgatggattgcactatggttctttcaatcaatgatggtaagt |
16389605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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