View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_220 (Length: 242)
Name: NF9388A_low_220
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_220 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3096870 - 3096649
Alignment:
| Q |
1 |
aaacaaatttaatttaatggtaagaacttggttctctaatctcaatatgttgaatttgattcattattttgaacttacataccacttgaacggggataat |
100 |
Q |
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| T |
3096870 |
aaacaaatttaatttaatggtaagaacttggctctctaatctcaatatgttgaatttgattcattattttgaacttacataccacttgaacggggataat |
3096771 |
T |
|
| Q |
101 |
ttgacattctctgtcacctgctcaacctccattgnnnnnnnnggagaaggtaagataatttcgatacttccaaaagaaccacacaacatattgccacatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
3096770 |
ttgacattctctgtcacctgctcaacctccattg-tttttttggagaaggtaagataatttcgatacttccaaaagaaccacacgacatattgctacatc |
3096672 |
T |
|
| Q |
201 |
gaggtcaaacttatcttggtctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3096671 |
gaggtcaaacttatcttggtctt |
3096649 |
T |
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