View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_230 (Length: 239)
Name: NF9388A_low_230
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_230 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 21397785 - 21397562
Alignment:
| Q |
8 |
atggacatcatggatgatgacattggtgataaattgaatagtaatgcatgctccaaaggcaatatgaacattggcaccacgaccatctatggtcttaaaa |
107 |
Q |
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| T |
21397785 |
atggacaccatggatgatgacattggtgataaattgaatagtaatgcatgctccaaaggcaatatgaacattggcaccacgaccatctatggtcttaaaa |
21397686 |
T |
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| Q |
108 |
ctgttcatgatcaattcttgcttcagggtgatcaccatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtgacggagagtgccag |
207 |
Q |
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| T |
21397685 |
ctgttcatgatcaattcttgcttcagggtgatcaccatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtgacggagagtgccag |
21397586 |
T |
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| Q |
208 |
gtattgggatcacagggtcgtcat |
231 |
Q |
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| T |
21397585 |
gtcttgggttcacagggtcgtcat |
21397562 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 17909812 - 17909760
Alignment:
| Q |
141 |
accatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtg |
193 |
Q |
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| T |
17909812 |
accatgtctctcttgaacacaatccaaagtggtctatcttggataacggcgtg |
17909760 |
T |
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