View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_231 (Length: 239)
Name: NF9388A_low_231
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_231 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 5197462 - 5197666
Alignment:
| Q |
25 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
124 |
Q |
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|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
5197462 |
ttggccttcataacagtgttgtgcatcaatccacgttggcgcatggcctggttttattacatcagtaagtttatgcgtagattctttccaacttttccat |
5197561 |
T |
|
| Q |
125 |
tttattgatgtgtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagctttaattt-agacagttt |
218 |
Q |
| |
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| |||||| | ||| ||||||| ||||||||| |||||||||| |||||||||| ||||| |||||||||| |||| ||||||||| ||||| ||| |
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| T |
5197562 |
tgtattgaagagtggccatagttcctgttgaaacattatgtggagtctcaaatatttgcatattgtaatttttatatttacctttaatttcagacaattt |
5197661 |
T |
|
| Q |
219 |
gatgt |
223 |
Q |
| |
|
||||| |
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|
| T |
5197662 |
gatgt |
5197666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 4840808 - 4840618
Alignment:
| Q |
18 |
aatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaat |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4840808 |
aatattgttagccttcataacagtgttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaact |
4840709 |
T |
|
| Q |
118 |
tttccattttattgatgtgtgtccatagt---acctgttgaaatgtggagtcgcaaatatttggatattataatttttatctttagctttaattt |
209 |
Q |
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| T |
4840708 |
tttccattgtattaaagagtgtccatagtttaaacttt----atgtggagtctaaaatatttggatattgtaatttttatctttagctttaattt |
4840618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 5174714 - 5174904
Alignment:
| Q |
18 |
aatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaat |
117 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
5174714 |
aatattgttggccctcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattatatcagtaagtttatgcgtagattttttccaact |
5174813 |
T |
|
| Q |
118 |
tttccattttattgatgtgtgtccatagt---acctgttgaaatgtggagtcgcaaatatttggatattataatttttatctttagctttaattt |
209 |
Q |
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|||||||| |||||| | ||||||||||| | || | |||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
5174814 |
tttccattgtattgaagagtgtccatagtttaaacttt----atgtggagtctcaaatatttggatattgtaatttttacctttagctttaattt |
5174904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 5184063 - 5184264
Alignment:
| Q |
25 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
124 |
Q |
| |
|
|||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
5184063 |
ttggccttcataactgtgttgggcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattctttccatcttttccat |
5184162 |
T |
|
| Q |
125 |
tttattgatgtgtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagctttaatt-tagacagttt |
218 |
Q |
| |
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| |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||| | || ||||||| |||| | |||||| ||||||||| |
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| T |
5184163 |
tatattgatgagtgtccatagttcctgttgaaactttatgtggagtctaaaatatttggatactgtattttttatatttaccgttaattccagacagttt |
5184262 |
T |
|
| Q |
219 |
ga |
220 |
Q |
| |
|
|| |
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|
| T |
5184263 |
ga |
5184264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 5215607 - 5215810
Alignment:
| Q |
25 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
5215607 |
ttggccttcataacagtgttgtgcgtcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtaaaatttttccaacgtttccat |
5215706 |
T |
|
| Q |
125 |
tttattgatgtgtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagctttaattt-agacagttt |
218 |
Q |
| |
|
| |||||| | ||||| | | ||||||||| | ||| |||| |||||||||||||||| |||||||||| |||| ||||||||| ||||||||| |
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| T |
5215707 |
tgtattgaagagtgtctgttattcctgttgaaacttcaagtgaagtctcaaatatttggatattgtaatttttatatttacctttaatttcagacagttt |
5215806 |
T |
|
| Q |
219 |
gatg |
222 |
Q |
| |
|
|||| |
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|
| T |
5215807 |
gatg |
5215810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 4855303 - 4855106
Alignment:
| Q |
29 |
ccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccatttta |
128 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||| ||||||||| || |
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| T |
4855303 |
ccttcataacagtgttg--catcaatccacgttggcgtttggcctggttttattacattagtaagtttgtaggtatcttttttccaacttttccattgta |
4855206 |
T |
|
| Q |
129 |
ttgatgtgtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagctttaattt-agacagtttgatg |
222 |
Q |
| |
|
|| | | |||||| |||||||||||||| |||||||||| ||||||||||| |||| |||||||||| |||| ||||||||| ||||||||||||| |
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|
| T |
4855205 |
ttaaagagtgtccgtagtacctgttgaaactttatgtggagtctcaaatatttgggtattgtaatttttatatttaactttaatttcagacagtttgatg |
4855106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 5161775 - 5161985
Alignment:
| Q |
18 |
aatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||| || |||||||||| | |
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| T |
5161775 |
aatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcgtatggcttggttttattacattagtaagtttgcacgatttttttttccaact |
5161874 |
T |
|
| Q |
118 |
tttccattttattgatgtgtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagctttaattt-ag |
211 |
Q |
| |
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|||||||| || ||| | |||| | |||||||||||||| | |||||||| |||||||||||||||| |||||||||| |||| | ||||||| || |
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|
| T |
5161875 |
tttccattgtactgaagagtgtacgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgttaatttcag |
5161974 |
T |
|
| Q |
212 |
acagtttgatg |
222 |
Q |
| |
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||||||||||| |
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|
| T |
5161975 |
acagtttgatg |
5161985 |
T |
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