View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_232 (Length: 238)

Name: NF9388A_low_232
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_232
NF9388A_low_232
[»] chr6 (3 HSPs)
chr6 (15-238)||(28529540-28529769)
chr6 (43-114)||(27926707-27926778)
chr6 (43-114)||(28056415-28056486)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 28529769 - 28529540
Alignment:
Q  15 catgtatgtgtcggtgcttcatag----atattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcctctaagcaaaacaag 110  Q
    |||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28529769 catgcatgtgtcggtgcttcatagctagatattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaag 28529670  T
Q  111 tgtttctgtcattctccagtcgatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaat--ttacaacnnnnnnnngtagcagg 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||        ||||||||    
T  28529669 tgtttctgtcattctccagtcaatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcagg 28529570  T
Q  209 agagtactggcattttcatattgaaatatt 238  Q
    ||||||||||||||||||||||||||||||    
T  28529569 agagtactggcattttcatattgaaatatt 28529540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 27926707 - 27926778
Alignment:
Q  43 tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcctctaagcaaaacaagtgtt 114  Q
    |||||||||||||||||||||||||| |||| ||| |||| |||| | |||| |||||| | ||||||||||    
T  27926707 tgagaaattacctggagaagaatgttcaagagatacacaatatcagttatgcttctaagtacaacaagtgtt 27926778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 28056486 - 28056415
Alignment:
Q  43 tgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcctctaagcaaaacaagtgtt 114  Q
    |||||||||||||||||||||||||| |||| ||| |||| |||| | |||| |||||| | ||| ||||||    
T  28056486 tgagaaattacctggagaagaatgttcaagagatacacaacatcagttatgcttctaagtataactagtgtt 28056415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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