View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_236 (Length: 235)

Name: NF9388A_low_236
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_236
NF9388A_low_236
[»] chr4 (18 HSPs)
chr4 (16-230)||(29123429-29123644)
chr4 (16-228)||(22340598-22340810)
chr4 (16-228)||(4303193-4303405)
chr4 (16-194)||(17826772-17826950)
chr4 (27-228)||(18116384-18116585)
chr4 (27-225)||(36279205-36279403)
chr4 (22-227)||(8110938-8111143)
chr4 (27-228)||(23158152-23158353)
chr4 (27-228)||(51872704-51872905)
chr4 (14-226)||(12915812-12916024)
chr4 (16-227)||(3621522-3621733)
chr4 (99-228)||(15705634-15705763)
chr4 (24-228)||(15649066-15649270)
chr4 (43-124)||(50693772-50693853)
chr4 (43-124)||(36951324-36951405)
chr4 (43-124)||(17469142-17469223)
chr4 (59-130)||(24059760-24059831)
chr4 (188-228)||(6614197-6614237)
[»] chr1 (8 HSPs)
chr1 (16-228)||(49369786-49369998)
chr1 (27-228)||(41342810-41343011)
chr1 (27-223)||(27029976-27030172)
chr1 (27-217)||(10003961-10004151)
chr1 (59-148)||(24545091-24545180)
chr1 (18-127)||(28520830-28520939)
chr1 (65-124)||(37668976-37669035)
chr1 (60-127)||(26996083-26996150)
[»] chr3 (14 HSPs)
chr3 (16-228)||(8595276-8595488)
chr3 (24-230)||(23603280-23603485)
chr3 (16-228)||(42462739-42462951)
chr3 (27-228)||(23571623-23571824)
chr3 (16-227)||(48547574-48547785)
chr3 (27-228)||(3514703-3514904)
chr3 (24-228)||(17153806-17154010)
chr3 (27-223)||(9819084-9819280)
chr3 (72-228)||(53152132-53152288)
chr3 (16-191)||(42459294-42459469)
chr3 (43-124)||(16664099-16664180)
chr3 (43-124)||(52196409-52196490)
chr3 (51-124)||(39632858-39632931)
chr3 (60-124)||(10754186-10754250)
[»] scaffold0032 (1 HSPs)
scaffold0032 (16-226)||(58387-58597)
[»] scaffold0041 (1 HSPs)
scaffold0041 (27-228)||(74317-74518)
[»] chr7 (18 HSPs)
chr7 (27-228)||(40891766-40891967)
chr7 (27-228)||(586803-587004)
chr7 (24-228)||(37075589-37075793)
chr7 (27-223)||(24819721-24819917)
chr7 (27-228)||(12121605-12121806)
chr7 (39-223)||(36575396-36575580)
chr7 (24-228)||(9403131-9403328)
chr7 (24-228)||(34981866-34982070)
chr7 (16-227)||(20705483-20705694)
chr7 (16-227)||(20873527-20873738)
chr7 (43-124)||(22865766-22865847)
chr7 (43-124)||(47548969-47549050)
chr7 (43-124)||(47553412-47553493)
chr7 (43-127)||(27987585-27987669)
chr7 (48-127)||(27869020-27869099)
chr7 (43-148)||(18815411-18815516)
chr7 (54-127)||(8457213-8457286)
chr7 (46-127)||(5196753-5196834)
[»] chr5 (10 HSPs)
chr5 (16-226)||(11266046-11266256)
chr5 (22-227)||(27891718-27891923)
chr5 (28-228)||(5824972-5825172)
chr5 (24-228)||(6678577-6678779)
chr5 (47-226)||(29150326-29150504)
chr5 (43-124)||(29322916-29322997)
chr5 (39-127)||(31962686-31962774)
chr5 (43-124)||(38931892-38931973)
chr5 (46-124)||(8896369-8896447)
chr5 (132-228)||(10462244-10462340)
[»] chr2 (9 HSPs)
chr2 (35-228)||(38938491-38938684)
chr2 (27-228)||(30275908-30276109)
chr2 (24-228)||(23384862-23385066)
chr2 (24-228)||(32349893-32350097)
chr2 (28-228)||(21963427-21963627)
chr2 (28-201)||(21964639-21964812)
chr2 (77-228)||(27914653-27914804)
chr2 (43-124)||(1258584-1258665)
chr2 (44-152)||(22300858-22300966)
[»] chr6 (8 HSPs)
chr6 (16-177)||(667335-667496)
chr6 (27-228)||(18295398-18295599)
chr6 (16-227)||(28604878-28605089)
chr6 (27-223)||(2894261-2894457)
chr6 (43-227)||(7218368-7218552)
chr6 (27-152)||(17228031-17228156)
chr6 (43-124)||(5391535-5391616)
chr6 (100-223)||(9759578-9759701)
[»] chr8 (5 HSPs)
chr8 (27-223)||(26077728-26077924)
chr8 (22-215)||(31423238-31423431)
chr8 (43-223)||(29532381-29532561)
chr8 (43-223)||(26390260-26390440)
chr8 (43-124)||(10801698-10801779)
[»] scaffold0003 (1 HSPs)
scaffold0003 (43-227)||(224744-224928)
[»] scaffold0289 (1 HSPs)
scaffold0289 (43-148)||(11164-11269)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 29123429 - 29123644
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggcgtctctttctgaatagac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29123429 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagac 29123528  T
Q  115 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29123529 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgtt 29123628  T
Q  215 ttttcaatgtgatttt 230  Q
    ||||||||||||||||    
T  29123629 ttttcaatgtgatttt 29123644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 22340810 - 22340598
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22340810 tggacatcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagact 22340711  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  22340710 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttt 22340611  T
Q  216 tttcaatgtgatt 228  Q
    |||||||||||||    
T  22340610 tttcaatgtgatt 22340598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 4303193 - 4303405
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4303193 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagact 4303292  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||    
T  4303293 tgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 4303392  T
Q  216 tttcaatgtgatt 228  Q
    |||||||||||||    
T  4303393 tttcaatgtgatt 4303405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 17826772 - 17826950
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17826772 tggacatcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagact 17826871  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggag 194  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17826872 tgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 18116384 - 18116585
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18116384 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 18116483  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  18116484 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 18116583  T
Q  227 tt 228  Q
    ||    
T  18116584 tt 18116585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 36279205 - 36279403
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  36279205 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 36279304  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 225  Q
    | || ||||| ||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||| ||||  ||||||||||||| |||||||    
T  36279305 ataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatgtg 36279403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 8111143 - 8110938
Alignment:
Q  22 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 121  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  8111143 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaac 8111044  T
Q  122 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 221  Q
    |||||||||||| ||||||||||| ||| || ||| | |  ||   ||||| |||||||||||||||||||||||||||||  | ||||| |||||||||    
T  8111043 aaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaa 8110944  T
Q  222 tgtgat 227  Q
    ||||||    
T  8110943 tgtgat 8110938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 23158152 - 23158353
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23158152 atcactgcatattttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 23158251  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||| |||    
T  23158252 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatatga 23158351  T
Q  227 tt 228  Q
    ||    
T  23158352 tt 23158353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 51872905 - 51872704
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  51872905 atcactgcagattttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 51872806  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||| | ||  || || | ||||||||||||||||||  ||||||||||||| ||||| ||    
T  51872805 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatgcga 51872706  T
Q  227 tt 228  Q
    ||    
T  51872705 tt 51872704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 12916024 - 12915812
Alignment:
Q  14 gatggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaataga 113  Q
    |||||||| ||| ||||||| ||| ||| | ||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12916024 gatggacaccaagatcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaataga 12915925  T
Q  114 cttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgt 213  Q
     ||||||||||| ||||| | ||||| ||||||||||||  |||||   ||  ||||||||||||||||||||||||||||||||||||| |  |||| |    
T  12915924 attgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttat 12915825  T
Q  214 tttttcaatgtga 226  Q
    |||||||||||||    
T  12915824 tttttcaatgtga 12915812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 3621733 - 3621522
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  3621733 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 3621634  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||| |||||||||||||| || |||||||| || ||| ||| | |  ||   ||||| ||| |||||||||||||||||||||||||| | ||||| |||    
T  3621633 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccattttttt 3621534  T
Q  216 tttcaatgtgat 227  Q
    || |||||||||    
T  3621533 ttccaatgtgat 3621522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 15705634 - 15705763
Alignment:
Q  99 ctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagg 198  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  199 aaagatatcatttgttttttcaatgtgatt 228  Q
    ||||  ||||||||||||||||||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgatt 15705763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 15649066 - 15649270
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||| ||||||||||||||| || |||||||||||||| || || ||||| ||||| |||||||||||| | |||||||||||| | ||||||||||    
T  15649066 aatatcaatgcagagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 15649165  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||| ||||||||||  |||||||  |   || |||||   | || ||||||||||||||||||||| | ||||| |||||||||||    
T  15649166 aggataatcttcgcaagcggaatgtcctcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatg 15649265  T
Q  224 tgatt 228  Q
    |||||    
T  15649266 tgatt 15649270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 50693772 - 50693853
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50693772 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 36951405 - 36951324
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36951405 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 17469142 - 17469223
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||| ||||||||| | ||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  17469142 atcattttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 24059831 - 24059760
Alignment:
Q  59 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 130  Q
    |||| ||||| | ||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaa 24059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6614197 - 6614237
Alignment:
Q  188 taaggaggaggaaagatatcatttgttttttcaatgtgatt 228  Q
    |||||||||||||||  ||||||||||||| ||||||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgatt 6614237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 49369998 - 49369786
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49369998 tggacaccaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagact 49369899  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  49369898 tgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttt 49369799  T
Q  216 tttcaatgtgatt 228  Q
    |||||||||||||    
T  49369798 tttcaatgtgatt 49369786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 41342810 - 41343011
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41342810 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 41342909  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  41342910 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 41343009  T
Q  227 tt 228  Q
    ||    
T  41343010 tt 41343011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 27030172 - 27029976
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||||    
T  27030172 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaagg 27030073  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||| ||||||||||||| |||||    
T  27030072 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 10004151 - 10003961
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  10004151 atcactgcagattttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaagg 10004052  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttt 217  Q
    | || ||||| |||| ||||||| || |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  |||||||||||||    
T  10004051 ataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgttttt 10003961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  59 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 148  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 28520830 - 28520939
Alignment:
Q  18 gacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttg 117  Q
    ||||| || |||| || ||||||| |||||||||| ||||||||||||||| | ||||| || || || ||||| ||||||||||| |||||||||||||    
T  28520830 gacattaacatcattgaagagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttg 28520929  T
Q  118 ctacaaagga 127  Q
    ||||| ||||    
T  28520930 ctacagagga 28520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  65 ggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  60 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 8595488 - 8595276
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8595488 tggacatcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagact 8595389  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  | |||||||||    
T  8595388 tgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttt 8595289  T
Q  216 tttcaatgtgatt 228  Q
    |||||||||||||    
T  8595288 tttcaatgtgatt 8595276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 23603485 - 23603280
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  23603485 aatatcattgcggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctacta 23603386  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  23603385 aggacaaccttcgcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatg 23603287  T
Q  224 tgatttt 230  Q
    |||||||    
T  23603286 tgatttt 23603280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 42462951 - 42462739
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42462951 tggacatcaacattactgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagact 42462852  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||| || |||||||||||||||| |||||||||||    
T  42462851 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttt 42462752  T
Q  216 tttcaatgtgatt 228  Q
    |||||||||||||    
T  42462751 tttcaatgtgatt 42462739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 23571623 - 23571824
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  23571623 atcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaagg 23571722  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||| |||||||||| |||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  23571723 acaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 23571822  T
Q  227 tt 228  Q
    ||    
T  23571823 tt 23571824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 48547785 - 48547574
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||    
T  48547785 tggacttcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagact 48547686  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||| |||||||||||||| ||||||||||| |||||| ||| | |  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  48547685 tgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 48547586  T
Q  216 tttcaatgtgat 227  Q
    ||||||||||||    
T  48547585 tttcaatgtgat 48547574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 3514904 - 3514703
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  3514904 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 3514805  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    | || ||||||||||||||||| ||| ||||||   ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  3514804 ataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 3514705  T
Q  227 tt 228  Q
    ||    
T  3514704 tt 3514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 17153806 - 17154010
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  17153806 aatatcaatgcagagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaa 17153905  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  ||||||||||||| |||||    
T  17153906 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatg 17154005  T
Q  224 tgatt 228  Q
    |||||    
T  17154006 tgatt 17154010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 9819280 - 9819084
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||||||||||||||||||||||    
T  9819280 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaagg 9819181  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||| |   ||||||||||||| |||||    
T  9819180 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatg 9819084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 53152132 - 53152288
Alignment:
Q  72 ttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttctt 171  Q
    ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  172 gtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatt 228  Q
    |||  || || ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgatt 53152288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 42459294 - 42459469
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||| ||| ||||||| ||| ||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| ||||| |||||||||||| |    
T  42459294 tggacaacaacatcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaat 42459393  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatact-tcttgtgcggccttgtgtggtaag 191  Q
    |||||||||||||||| | | ||| |||||||||||| |||||| | | | | ||||||||| ||||||||||||||    
T  42459394 tgctacaaaggacaacttgcacaaaaggaatgtccttgaggcta-acaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 16664180 - 16664099
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  16664180 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 16664099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 52196490 - 52196409
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52196490 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 39632858 - 39632931
Alignment:
Q  51 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 39632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  60 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    ||||||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 58387 - 58597
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  58387 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 58486  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||  | | |||||||    
T  58487 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttt 58586  T
Q  216 tttcaatgtga 226  Q
    |||||||||||    
T  58587 tttcaatgtga 58597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 74518 - 74317
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74518 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 74419  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  74418 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtga 74319  T
Q  227 tt 228  Q
    ||    
T  74318 tt 74317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 40891766 - 40891967
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40891766 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 40891865  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  40891866 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtga 40891965  T
Q  227 tt 228  Q
    ||    
T  40891966 tt 40891967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 587004 - 586803
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  587004 atcactgcagagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaagg 586905  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||| ||||| || |||||||||||| |||||||  ||  |||  ||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  586904 acaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatgtga 586805  T
Q  227 tt 228  Q
    ||    
T  586804 tt 586803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 37075589 - 37075793
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| ||||||||||||    
T  37075589 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaa 37075688  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||| ||||||||||||||  |||||||||||||||||||    
T  37075689 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatg 37075788  T
Q  224 tgatt 228  Q
    |||||    
T  37075789 tgatt 37075793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 24819917 - 24819721
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||    
T  24819917 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaagg 24819818  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    | || ||||| |||||||| |||||| |||||||  |   ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  24819817 ataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 24819721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 12121806 - 12121605
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12121806 atcactgcaaattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 12121707  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || |||||||||||||||||||   ||||||||||||| ||||| ||    
T  12121706 ataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatgcga 12121607  T
Q  227 tt 228  Q
    ||    
T  12121606 tt 12121605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 36575396 - 36575580
Alignment:
Q  39 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgca 138  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || ||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  139 agaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  ||||||||||||| |||||    
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatg 36575580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 9403131 - 9403328
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||         |||||| ||||||||||||    
T  9403131 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttgg-------acctgaatcgacttgctacaa 9403223  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  9403224 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 9403323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 34982070 - 34981866
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| | ||||||||||    
T  34982070 aatatcaatgcagagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 34981971  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||||||||||||||  |||||||  |   ||  ||||  || || ||||||||||||||||||||| | ||||| || ||||||||    
T  34981970 aggataatcttcgcaagaggaatgtcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatg 34981871  T
Q  224 tgatt 228  Q
    |||||    
T  34981870 tgatt 34981866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 20705483 - 20705694
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20705483 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20705582  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||| |||||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | |||||||||    
T  20705583 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20705682  T
Q  216 tttcaatgtgat 227  Q
    || |||||||||    
T  20705683 ttccaatgtgat 20705694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 20873527 - 20873738
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20873527 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20873626  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||| |||||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | |||||||||    
T  20873627 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20873726  T
Q  216 tttcaatgtgat 227  Q
    || |||||||||    
T  20873727 ttccaatgtgat 20873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 22865766 - 22865847
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22865766 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 47549050 - 47548969
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47549050 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 47553493 - 47553412
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47553493 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

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Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 27987585 - 27987669
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27987585 atcattttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaagga 27987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 27869099 - 27869020
Alignment:
Q  48 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    ||||||||||| |||||||||   ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 18815411 - 18815516
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 142  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| || ||  | |||||    
T  18815411 atcattttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagag 18815510  T
Q  143 gaatgt 148  Q
    ||||||    
T  18815511 gaatgt 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 8457213 - 8457286
Alignment:
Q  54 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaagga 8457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 5196834 - 5196753
Alignment:
Q  46 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    ||||||| |||||||| ||| || | |||||||| || || ||| | || || |||||||| ||||||||||||||||||||    
T  5196834 aatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaagga 5196753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 11266256 - 11266046
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11266256 tggacaacaacatcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagact 11266157  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  11266156 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 11266057  T
Q  216 tttcaatgtga 226  Q
    |||||||||||    
T  11266056 tttcaatgtga 11266046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 27891923 - 27891718
Alignment:
Q  22 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 121  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| ||    
T  27891923 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaac 27891824  T
Q  122 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 221  Q
    |||||||||||| ||||||||||| |||||||||| | |  ||   ||||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  27891823 aaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 27891724  T
Q  222 tgtgat 227  Q
    ||||||    
T  27891723 tgtgat 27891718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 5824972 - 5825172
Alignment:
Q  28 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  5824972 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 5825071  T
Q  128 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 227  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||||| |||||||    
T  5825072 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgat 5825171  T
Q  228 t 228  Q
    |    
T  5825172 t 5825172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 6678577 - 6678779
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| ||||||||||||    
T  6678577 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaa 6678674  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || | ||||||||||||||||||  |||||||||||||||||||    
T  6678675 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatg 6678774  T
Q  224 tgatt 228  Q
    |||||    
T  6678775 tgatt 6678779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 226
Target Start/End: Complemental strand, 29150504 - 29150326
Alignment:
Q  47 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 146  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||| | ||||| ||||||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  147 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    |||| | ||||||   ||   |||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtga 29150326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 29322997 - 29322916
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29322997 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 31962686 - 31962774
Alignment:
Q  39 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  31962686 tttgctcaatttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaagga 31962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 38931973 - 38931892
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | |||||||||||  | || |||||||| |||||||||| |||||||||||||||||||||||||||    
T  38931973 atcaatttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 8896447 - 8896369
Alignment:
Q  46 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    ||||||||||| | ||||||||||  || || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8896447 aatttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 10462244 - 10462340
Alignment:
Q  132 cttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatt 228  Q
    ||||||||||||||||||||  |||||||  ||  || |||||  || || ||| ||||||||||||||||  ||||||||||||| ||||||||||    
T  10462244 cttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgatt 10462340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 38938684 - 38938491
Alignment:
Q  35 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaacctt 134  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38938684 agagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaatctt 38938585  T
Q  135 cgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatt 228  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||  | ||||| ||||||||||||||||    
T  38938584 cgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattttttcaatgtgatt 38938491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 30276109 - 30275908
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||    
T  30276109 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaagg 30276010  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||| ||||||||||||| ||||||||    
T  30276009 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatgtga 30275910  T
Q  227 tt 228  Q
    ||    
T  30275909 tt 30275908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 23385066 - 23384862
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  23385066 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaa 23384967  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  |||||||||| || |||||    
T  23384966 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatg 23384867  T
Q  224 tgatt 228  Q
    |||||    
T  23384866 tgatt 23384862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 32350097 - 32349893
Alignment:
Q  24 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  32350097 aatatcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaa 32349998  T
Q  124 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| |  ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  32349997 aggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 32349898  T
Q  224 tgatt 228  Q
     ||||    
T  32349897 cgatt 32349893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 21963627 - 21963427
Alignment:
Q  28 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21963627 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21963528  T
Q  128 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 227  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||   ||||||||||||||| |||||||    
T  21963527 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgat 21963428  T
Q  228 t 228  Q
    |    
T  21963427 t 21963427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 21964812 - 21964639
Alignment:
Q  28 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21964812 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21964713  T
Q  128 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaa 201  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||    
T  21964712 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 27914653 - 27914804
Alignment:
Q  77 agttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcg 176  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  177 gccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatt 228  Q
    ||  | ||||||||||||||||||||  ||||||||||||| ||||||||||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgatt 27914804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 1258665 - 1258584
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258665 atcaatttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 22300966 - 22300858
Alignment:
Q  44 tcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagagg 143  Q
    ||||||||||||| | |||| |||||| || || |||||||| |||||  | ||||||||||||||||||| |||||||||||| ||  | ||||| ||     
T  22300966 tcaatttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaaga 22300867  T
Q  144 aatgtcctt 152  Q
    |||||||||    
T  22300866 aatgtcctt 22300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 667496 - 667335
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  667496 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 667397  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcgg 177  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||||    
T  667396 tgctacaaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgcgg 667335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 18295398 - 18295599
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  18295398 atcactgcatattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 18295497  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 226  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  18295498 ataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 18295597  T
Q  227 tt 228  Q
    ||    
T  18295598 tt 18295599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 28604878 - 28605089
Alignment:
Q  16 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  28604878 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 28604977  T
Q  116 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    ||| |||||||||||||| || |||||||| || ||| ||| | |  ||   ||||| |||||||||||||||||||||||||||||| | |||||||||    
T  28604978 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgttt 28605077  T
Q  216 tttcaatgtgat 227  Q
    || |||||||||    
T  28605078 ttccaatgtgat 28605089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 2894457 - 2894261
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  2894457 atcactgcagattttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaagg 2894358  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    | || ||||| ||||||||| ||||| |||| ||  ||  ||||||||  || || |||||||| |||||||| |   ||||||||||||| |||||    
T  2894357 ataatcttcgtaagaggaatatccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatg 2894261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 7218368 - 7218552
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 142  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | || || ||    
T  7218368 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaag 7218467  T
Q  143 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 227  Q
    ||||||| || ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  7218468 gaatgtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 7218552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 17228156 - 17228031
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||| ||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  17228156 atcactgaagagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaagg 17228057  T
Q  127 acaaccttcgcaagaggaatgtcctt 152  Q
    ||||  | ||||| ||||||||||||    
T  17228056 acaatttgcgcaaaaggaatgtcctt 17228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 5391535 - 5391616
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||| ||| || || ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391535 atcaatttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 9759578 - 9759701
Alignment:
Q  100 tctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagga 199  Q
    |||||| ||||||||||||||||||||| || || ||||| ||||||||| || |||| ||   |   | ||||||||| ||| ||||||||||||| ||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgtattgtgcggctttgcgtggtaaggaggatga 9759677  T
Q  200 aagatatcatttgttttttcaatg 223  Q
    |||  | ||| |||||||||||||    
T  9759678 aagggaccatctgttttttcaatg 9759701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 26077728 - 26077924
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26077728 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 26077827  T
Q  127 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||| |||||||| |||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  26077828 acaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 26077924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 31423238 - 31423431
Alignment:
Q  22 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 121  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||    
T  31423238 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaac 31423337  T
Q  122 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 215  Q
    |||| ||||||||||||||||||| |||||| | | |||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  31423338 aaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 29532561 - 29532381
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 142  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |  |||| ||    
T  29532561 atcaatttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaag 29532462  T
Q  143 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    |||||||||||  ||||   |||  ||||||| ||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  29532461 gaatgtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatg 29532381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 26390260 - 26390440
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 142  Q
    ||||||||||||||||||  ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |  |||  ||    
T  26390260 atcaatttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataag 26390359  T
Q  143 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 223  Q
    ||||||||||| |||||   |||  |||| |  ||||||||||||||||||||| |||||    |||||||| ||||||||    
T  26390360 gaatgtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatg 26390440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 10801698 - 10801779
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10801698 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 224744 - 224928
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 142  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | || || ||    
T  224744 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaag 224843  T
Q  143 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 227  Q
    |||||||||| ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  224844 gaatgtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 224928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 11269 - 11164
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 142  Q
    |||| ||||| ||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||| |||||||||| || || || |||||    
T  11269 atcattttttgtggcacaaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagag 11170  T
Q  143 gaatgt 148  Q
     |||||    
T  11169 aaatgt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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