View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_237 (Length: 235)
Name: NF9388A_low_237
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_237 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 2535299 - 2535104
Alignment:
| Q |
22 |
tgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagttttccttgagaaaaacaattaagtt |
121 |
Q |
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| T |
2535299 |
tgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagttttctttgagaaaaacaattaagtt |
2535200 |
T |
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| Q |
122 |
ttctaaatagcaatgttaacagaaaacgattgaagtataagttatacttcctcaaagattcaaacacgacgggaaaggcataacagagcaacaaca |
217 |
Q |
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| T |
2535199 |
ttctaaatagcaatgttaacagaaaaggattgaagtataagttatacttcctcaaatattcaaacacgacgggaaaggcataacagagcaacaaca |
2535104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 11446949 - 11447075
Alignment:
| Q |
22 |
tgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagttttccttgagaaaaacaattaagtt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
11446949 |
tgcttttctgtcttgttcaatttctgggttgtatgagatatgaatgttgttcaaagttcatgtaaacaattaagttttctttgagcaaaacaattaagtt |
11447048 |
T |
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| Q |
122 |
ttctaaatagcaatgttaacagaaaac |
148 |
Q |
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| T |
11447049 |
ttctaaatagcaatgttaacagaaaac |
11447075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 47563618 - 47563702
Alignment:
| Q |
128 |
atagcaatgtta--acagaaaacgattgaagtataagttatactt-cctcaaagattcaaacacgacgggaaaggcataacagag |
209 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
47563618 |
atagcaatgttattacagcaaacgattgaagtataagttatactttcctcaaagattcaaacgtgacggaaaaggcataacagag |
47563702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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